JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 22:42 4.7KJPred server log file
[TXT]README2016-02-15 12:21 2.1KResults file descriptions
[TXT]d3l51b_.name2015-04-17 19:29 0 Job name flag file
[ ]jp_uWr_NuO.align2015-04-17 22:41 158KPSIBLAST alignment in FASTA format
[TXT]jp_uWr_NuO.als2015-04-17 22:41 2.9KAlscript command file for PS/PDF output
[ ]jp_uWr_NuO.blast.gz2015-04-17 22:40 2.9MCompressed PSIBLAST output file
[TXT]jp_uWr_NuO.coils.csv2015-04-17 22:41 1.0KCOILS output in CSV format
[ ]jp_uWr_NuO.coilseq.lupas_142015-04-17 22:41 7.0KCOILS output, window length 14
[ ]jp_uWr_NuO.coilseq.lupas_212015-04-17 22:41 7.0KCOILS output, window length 21
[ ]jp_uWr_NuO.coilseq.lupas_282015-04-17 22:41 7.0KCOILS output, window length 28
[ ]jp_uWr_NuO.concise2015-04-17 22:41 310KPrediction: coiled-coil, solvent, alignment
[ ]jp_uWr_NuO.concise.blc2015-04-17 22:41 158KBLC format prediction and alignment data
[ ]jp_uWr_NuO.concise.fasta2015-04-17 22:41 160KPrediction: coiled-coil, solvent, alignment
[ ]jp_uWr_NuO.concise.pdf2015-04-17 22:41 1.1MPDF prediction and alignment data
[ ]jp_uWr_NuO.concise.ps2015-04-17 22:41 19MPrediction: coiled-coil, solvent, alignment
[ ]jp_uWr_NuO.fasta2015-04-17 22:06 181 Input query sequence in FASTA format
[ ]jp_uWr_NuO.full_MSA.fasta2015-04-17 22:40 4.9MFull MSA before JPred filters in FASTA
[TXT]jp_uWr_NuO.full_MSA.fasta.noGaps.html2015-04-17 22:42 1.0MFull MSA before JPred filters in FASTA
[TXT]jp_uWr_NuO.full_MSA.fasta.withGaps.html2015-04-17 22:42 17MFull MSA before JPred filters in FASTA
[ ]jp_uWr_NuO.hmm2015-04-17 22:41 31KHHMer2 profile of the alignment
[TXT]jp_uWr_NuO.html2015-04-17 22:41 341KHTML prediction and alignment data
[ ]jp_uWr_NuO.input2015-04-17 19:29 173 Raw input data for analysis
[ ]jp_uWr_NuO.jalview2015-04-17 22:41 4.2KJalview annotation file for alignment
[ ]jp_uWr_NuO.jnet2015-04-17 22:41 6.1KJnet secondary structure output
[TXT]jp_uWr_NuO.profile2015-04-17 22:31 27KPSIBLAST profile from alignment
[ ]jp_uWr_NuO.pssm2015-04-17 22:41 36KPSIBLAST PSSM for Jnet
[TXT]jp_uWr_NuO.results.html2016-02-15 12:21 76KJPred results page
[TXT]jp_uWr_NuO.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_uWr_NuO.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_uWr_NuO.seq2015-04-17 19:29 181 Sequence data file
[TXT]jp_uWr_NuO.simple.html2015-04-17 22:41 1.5KBrief HTML: sequence and prediction only
[TXT]jp_uWr_NuO.svg.html2015-04-17 22:42 68KJalview SVG summary of results
[ ]jp_uWr_NuO.tar.gz2015-04-17 22:42 5.9MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.