JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 21:04 4.7KJPred server log file
[TXT]README2016-02-15 12:21 2.1KResults file descriptions
[TXT]d3l5oa_.name2015-04-17 18:53 0 Job name flag file
[ ]jp_B0Gh_gE.align2015-04-17 21:04 118KPSIBLAST alignment in FASTA format
[TXT]jp_B0Gh_gE.als2015-04-17 21:04 4.3KAlscript command file for PS/PDF output
[ ]jp_B0Gh_gE.blast.gz2015-04-17 21:04 405KCompressed PSIBLAST output file
[TXT]jp_B0Gh_gE.coils.csv2015-04-17 21:04 1.5KCOILS output in CSV format
[ ]jp_B0Gh_gE.coilseq.lupas_142015-04-17 21:04 10KCOILS output, window length 14
[ ]jp_B0Gh_gE.coilseq.lupas_212015-04-17 21:04 10KCOILS output, window length 21
[ ]jp_B0Gh_gE.coilseq.lupas_282015-04-17 21:04 10KCOILS output, window length 28
[ ]jp_B0Gh_gE.concise2015-04-17 21:04 239KPrediction: coiled-coil, solvent, alignment
[ ]jp_B0Gh_gE.concise.blc2015-04-17 21:04 120KBLC format prediction and alignment data
[ ]jp_B0Gh_gE.concise.fasta2015-04-17 21:04 121KPrediction: coiled-coil, solvent, alignment
[ ]jp_B0Gh_gE.concise.pdf2015-04-17 21:04 839KPDF prediction and alignment data
[ ]jp_B0Gh_gE.concise.ps2015-04-17 21:04 15MPrediction: coiled-coil, solvent, alignment
[ ]jp_B0Gh_gE.fasta2015-04-17 20:59 263 Input query sequence in FASTA format
[ ]jp_B0Gh_gE.full_MSA.fasta2015-04-17 21:04 753KFull MSA before JPred filters in FASTA
[TXT]jp_B0Gh_gE.full_MSA.fasta.noGaps.html2015-04-17 21:04 203KFull MSA before JPred filters in FASTA
[TXT]jp_B0Gh_gE.full_MSA.fasta.withGaps.html2015-04-17 21:04 3.1MFull MSA before JPred filters in FASTA
[ ]jp_B0Gh_gE.hmm2015-04-17 21:04 46KHHMer2 profile of the alignment
[TXT]jp_B0Gh_gE.html2015-04-17 21:04 229KHTML prediction and alignment data
[ ]jp_B0Gh_gE.input2015-04-17 18:53 254 Raw input data for analysis
[ ]jp_B0Gh_gE.jalview2015-04-17 21:04 5.8KJalview annotation file for alignment
[ ]jp_B0Gh_gE.jnet2015-04-17 21:04 9.0KJnet secondary structure output
[TXT]jp_B0Gh_gE.profile2015-04-17 21:03 40KPSIBLAST profile from alignment
[ ]jp_B0Gh_gE.pssm2015-04-17 21:04 53KPSIBLAST PSSM for Jnet
[TXT]jp_B0Gh_gE.results.html2016-02-15 12:21 110KJPred results page
[TXT]jp_B0Gh_gE.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_B0Gh_gE.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_B0Gh_gE.seq2015-04-17 18:53 263 Sequence data file
[TXT]jp_B0Gh_gE.simple.html2015-04-17 21:04 1.9KBrief HTML: sequence and prediction only
[TXT]jp_B0Gh_gE.svg.html2015-04-17 21:04 102KJalview SVG summary of results
[ ]jp_B0Gh_gE.tar.gz2015-04-17 21:04 1.7MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.