JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 20:13 4.7KJPred server log file
[TXT]README2016-02-15 12:21 2.1KResults file descriptions
[TXT]d3lasa_.name2015-04-17 18:16 0 Job name flag file
[ ]jp_ywWCsH3.align2015-04-17 20:12 196KPSIBLAST alignment in FASTA format
[TXT]jp_ywWCsH3.als2015-04-17 20:12 2.9KAlscript command file for PS/PDF output
[ ]jp_ywWCsH3.blast.gz2015-04-17 20:10 5.5MCompressed PSIBLAST output file
[TXT]jp_ywWCsH3.coils.csv2015-04-17 20:12 1.0KCOILS output in CSV format
[ ]jp_ywWCsH3.coilseq.lupas_142015-04-17 20:12 7.0KCOILS output, window length 14
[ ]jp_ywWCsH3.coilseq.lupas_212015-04-17 20:12 7.0KCOILS output, window length 21
[ ]jp_ywWCsH3.coilseq.lupas_282015-04-17 20:12 7.0KCOILS output, window length 28
[ ]jp_ywWCsH3.concise2015-04-17 20:12 382KPrediction: coiled-coil, solvent, alignment
[ ]jp_ywWCsH3.concise.blc2015-04-17 20:12 195KBLC format prediction and alignment data
[ ]jp_ywWCsH3.concise.fasta2015-04-17 20:12 197KPrediction: coiled-coil, solvent, alignment
[ ]jp_ywWCsH3.concise.pdf2015-04-17 20:13 1.4MPDF prediction and alignment data
[ ]jp_ywWCsH3.concise.ps2015-04-17 20:12 24MPrediction: coiled-coil, solvent, alignment
[ ]jp_ywWCsH3.fasta2015-04-17 20:03 181 Input query sequence in FASTA format
[ ]jp_ywWCsH3.full_MSA.fasta2015-04-17 20:11 14MFull MSA before JPred filters in FASTA
[TXT]jp_ywWCsH3.full_MSA.fasta.noGaps.html2015-04-17 20:13 1.4MFull MSA before JPred filters in FASTA
[TXT]jp_ywWCsH3.full_MSA.fasta.withGaps.html2015-04-17 20:13 32MFull MSA before JPred filters in FASTA
[ ]jp_ywWCsH3.hmm2015-04-17 20:12 31KHHMer2 profile of the alignment
[TXT]jp_ywWCsH3.html2015-04-17 20:12 416KHTML prediction and alignment data
[ ]jp_ywWCsH3.input2015-04-17 18:16 173 Raw input data for analysis
[ ]jp_ywWCsH3.jalview2015-04-17 20:12 4.2KJalview annotation file for alignment
[ ]jp_ywWCsH3.jnet2015-04-17 20:12 6.1KJnet secondary structure output
[TXT]jp_ywWCsH3.profile2015-04-17 20:09 27KPSIBLAST profile from alignment
[ ]jp_ywWCsH3.pssm2015-04-17 20:12 36KPSIBLAST PSSM for Jnet
[TXT]jp_ywWCsH3.results.html2016-02-15 12:21 75KJPred results page
[TXT]jp_ywWCsH3.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_ywWCsH3.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_ywWCsH3.seq2015-04-17 18:16 181 Sequence data file
[TXT]jp_ywWCsH3.simple.html2015-04-17 20:12 1.4KBrief HTML: sequence and prediction only
[TXT]jp_ywWCsH3.svg.html2015-04-17 20:13 67KJalview SVG summary of results
[ ]jp_ywWCsH3.tar.gz2015-04-17 20:13 10MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.