A Protein Secondary Structure Prediction Server
| Name | Last modified | Size | Description | |
|---|---|---|---|---|
![[TXT]](/icons/text.gif){kind=icon} | LOG | 2015-04-17 20:09 | 4.7K | JPred server log file |
| README | 2016-02-15 12:21 | 2.1K | Results file descriptions |
| d3mg3a1.name | 2015-04-17 18:16 | 0 | Job name flag file |
![[ ]](/icons/unknown.gif){kind=icon} | jp_0YivnP_.align | 2015-04-17 20:09 | 23K | PSIBLAST alignment in FASTA format |
| jp_0YivnP_.als | 2015-04-17 20:09 | 2.5K | Alscript command file for PS/PDF output |
![[ ]](/icons/compressed.gif){kind=icon} | jp_0YivnP_.blast.gz | 2015-04-17 20:09 | 70K | Compressed PSIBLAST output file |
| jp_0YivnP_.coils.csv | 2015-04-17 20:09 | 1.0K | COILS output in CSV format |
| jp_0YivnP_.coilseq.lupas_14 | 2015-04-17 20:09 | 6.9K | COILS output, window length 14 |
| jp_0YivnP_.coilseq.lupas_21 | 2015-04-17 20:09 | 6.9K | COILS output, window length 21 |
| jp_0YivnP_.coilseq.lupas_28 | 2015-04-17 20:09 | 6.9K | COILS output, window length 28 |
| jp_0YivnP_.concise | 2015-04-17 20:09 | 51K | Prediction: coiled-coil, solvent, alignment |
| jp_0YivnP_.concise.blc | 2015-04-17 20:09 | 25K | BLC format prediction and alignment data |
| jp_0YivnP_.concise.fasta | 2015-04-17 20:09 | 25K | Prediction: coiled-coil, solvent, alignment |
![[ ]](/icons/layout.gif){kind=icon} | jp_0YivnP_.concise.pdf | 2015-04-17 20:09 | 164K | PDF prediction and alignment data |
| jp_0YivnP_.concise.ps | 2015-04-17 20:09 | 3.0M | Prediction: coiled-coil, solvent, alignment |
| jp_0YivnP_.fasta | 2015-04-17 20:05 | 180 | Input query sequence in FASTA format |
| jp_0YivnP_.full_MSA.fasta | 2015-04-17 20:09 | 84K | Full MSA before JPred filters in FASTA |
| jp_0YivnP_.full_MSA.fasta.noGaps.html | 2015-04-17 20:09 | 62K | Full MSA before JPred filters in FASTA |
| jp_0YivnP_.full_MSA.fasta.withGaps.html | 2015-04-17 20:09 | 264K | Full MSA before JPred filters in FASTA |
| jp_0YivnP_.hmm | 2015-04-17 20:09 | 31K | HHMer2 profile of the alignment |
| jp_0YivnP_.html | 2015-04-17 20:09 | 64K | HTML prediction and alignment data |
| jp_0YivnP_.input | 2015-04-17 18:16 | 172 | Raw input data for analysis |
| jp_0YivnP_.jalview | 2015-04-17 20:09 | 4.1K | Jalview annotation file for alignment |
| jp_0YivnP_.jnet | 2015-04-17 20:09 | 6.1K | Jnet secondary structure output |
| jp_0YivnP_.profile | 2015-04-17 20:07 | 27K | PSIBLAST profile from alignment |
| jp_0YivnP_.pssm | 2015-04-17 20:09 | 35K | PSIBLAST PSSM for Jnet |
| jp_0YivnP_.results.html | 2016-02-15 12:21 | 75K | JPred results page |
| jp_0YivnP_.results_jalview.html | 2016-02-24 17:18 | 13K | Jalview results options |
| jp_0YivnP_.results_jalview_app.html | 2016-02-24 17:18 | 16K | HTML prediction and alignment data |
| jp_0YivnP_.seq | 2015-04-17 18:16 | 180 | Sequence data file |
| jp_0YivnP_.simple.html | 2015-04-17 20:09 | 1.4K | Brief HTML: sequence and prediction only |
![[TXT]](jp_0YivnP_.svg.html) | jp_0YivnP_.svg.html | 2015-04-17 20:09 | 67K | Jalview SVG summary of results |
| jp_0YivnP_.tar.gz | 2015-04-17 20:09 | 335K | Archive containing complete results |
