JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 21:51 4.7KJPred server log file
[TXT]README2016-02-15 12:21 2.1KResults file descriptions
[TXT]d3mhra_.name2015-04-17 19:19 0 Job name flag file
[ ]jp_JA1M09c.align2015-04-17 21:50 135KPSIBLAST alignment in FASTA format
[TXT]jp_JA1M09c.als2015-04-17 21:50 3.0KAlscript command file for PS/PDF output
[ ]jp_JA1M09c.blast.gz2015-04-17 21:50 1.2MCompressed PSIBLAST output file
[TXT]jp_JA1M09c.coils.csv2015-04-17 21:50 1.4KCOILS output in CSV format
[ ]jp_JA1M09c.coilseq.lupas_142015-04-17 21:50 9.9KCOILS output, window length 14
[ ]jp_JA1M09c.coilseq.lupas_212015-04-17 21:50 9.9KCOILS output, window length 21
[ ]jp_JA1M09c.coilseq.lupas_282015-04-17 21:50 9.9KCOILS output, window length 28
[ ]jp_JA1M09c.concise2015-04-17 21:50 271KPrediction: coiled-coil, solvent, alignment
[ ]jp_JA1M09c.concise.blc2015-04-17 21:50 137KBLC format prediction and alignment data
[ ]jp_JA1M09c.concise.fasta2015-04-17 21:50 138KPrediction: coiled-coil, solvent, alignment
[ ]jp_JA1M09c.concise.pdf2015-04-17 21:51 856KPDF prediction and alignment data
[ ]jp_JA1M09c.concise.ps2015-04-17 21:50 16MPrediction: coiled-coil, solvent, alignment
[ ]jp_JA1M09c.fasta2015-04-17 21:46 252 Input query sequence in FASTA format
[ ]jp_JA1M09c.full_MSA.fasta2015-04-17 21:50 2.0MFull MSA before JPred filters in FASTA
[TXT]jp_JA1M09c.full_MSA.fasta.noGaps.html2015-04-17 21:51 481KFull MSA before JPred filters in FASTA
[TXT]jp_JA1M09c.full_MSA.fasta.withGaps.html2015-04-17 21:51 6.5MFull MSA before JPred filters in FASTA
[ ]jp_JA1M09c.hmm2015-04-17 21:50 44KHHMer2 profile of the alignment
[TXT]jp_JA1M09c.html2015-04-17 21:50 264KHTML prediction and alignment data
[ ]jp_JA1M09c.input2015-04-17 19:19 243 Raw input data for analysis
[ ]jp_JA1M09c.jalview2015-04-17 21:50 5.7KJalview annotation file for alignment
[ ]jp_JA1M09c.jnet2015-04-17 21:50 8.6KJnet secondary structure output
[TXT]jp_JA1M09c.profile2015-04-17 21:49 38KPSIBLAST profile from alignment
[ ]jp_JA1M09c.pssm2015-04-17 21:50 51KPSIBLAST PSSM for Jnet
[TXT]jp_JA1M09c.results.html2016-02-15 12:21 103KJPred results page
[TXT]jp_JA1M09c.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_JA1M09c.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_JA1M09c.seq2015-04-17 19:19 252 Sequence data file
[TXT]jp_JA1M09c.simple.html2015-04-17 21:50 1.6KBrief HTML: sequence and prediction only
[TXT]jp_JA1M09c.svg.html2015-04-17 21:51 95KJalview SVG summary of results
[ ]jp_JA1M09c.tar.gz2015-04-17 21:51 2.7MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.