A Protein Secondary Structure Prediction Server
| Name | Last modified | Size | Description | |
|---|---|---|---|---|
![[TXT]](/icons/text.gif){kind=icon} | LOG | 2015-04-17 20:14 | 4.7K | JPred server log file |
| README | 2016-02-15 12:21 | 2.1K | Results file descriptions |
| d3n2wa_.name | 2015-04-17 18:16 | 0 | Job name flag file |
![[ ]](/icons/unknown.gif){kind=icon} | jp_y8RePk5.align | 2015-04-17 20:12 | 489K | PSIBLAST alignment in FASTA format |
| jp_y8RePk5.als | 2015-04-17 20:13 | 4.4K | Alscript command file for PS/PDF output |
![[ ]](/icons/compressed.gif){kind=icon} | jp_y8RePk5.blast.gz | 2015-04-17 20:11 | 2.3M | Compressed PSIBLAST output file |
| jp_y8RePk5.coils.csv | 2015-04-17 20:12 | 2.2K | COILS output in CSV format |
| jp_y8RePk5.coilseq.lupas_14 | 2015-04-17 20:12 | 15K | COILS output, window length 14 |
| jp_y8RePk5.coilseq.lupas_21 | 2015-04-17 20:12 | 15K | COILS output, window length 21 |
| jp_y8RePk5.coilseq.lupas_28 | 2015-04-17 20:12 | 15K | COILS output, window length 28 |
| jp_y8RePk5.concise | 2015-04-17 20:12 | 965K | Prediction: coiled-coil, solvent, alignment |
| jp_y8RePk5.concise.blc | 2015-04-17 20:13 | 487K | BLC format prediction and alignment data |
| jp_y8RePk5.concise.fasta | 2015-04-17 20:12 | 492K | Prediction: coiled-coil, solvent, alignment |
![[ ]](/icons/layout.gif){kind=icon} | jp_y8RePk5.concise.pdf | 2015-04-17 20:13 | 3.2M | PDF prediction and alignment data |
| jp_y8RePk5.concise.ps | 2015-04-17 20:13 | 60M | Prediction: coiled-coil, solvent, alignment |
| jp_y8RePk5.fasta | 2015-04-17 20:05 | 385 | Input query sequence in FASTA format |
| jp_y8RePk5.full_MSA.fasta | 2015-04-17 20:11 | 4.6M | Full MSA before JPred filters in FASTA |
| jp_y8RePk5.full_MSA.fasta.noGaps.html | 2015-04-17 20:13 | 848K | Full MSA before JPred filters in FASTA |
| jp_y8RePk5.full_MSA.fasta.withGaps.html | 2015-04-17 20:13 | 15M | Full MSA before JPred filters in FASTA |
| jp_y8RePk5.hmm | 2015-04-17 20:12 | 69K | HHMer2 profile of the alignment |
| jp_y8RePk5.html | 2015-04-17 20:12 | 762K | HTML prediction and alignment data |
| jp_y8RePk5.input | 2015-04-17 18:16 | 374 | Raw input data for analysis |
| jp_y8RePk5.jalview | 2015-04-17 20:12 | 8.1K | Jalview annotation file for alignment |
| jp_y8RePk5.jnet | 2015-04-17 20:12 | 13K | Jnet secondary structure output |
| jp_y8RePk5.profile | 2015-04-17 20:08 | 59K | PSIBLAST profile from alignment |
| jp_y8RePk5.pssm | 2015-04-17 20:12 | 79K | PSIBLAST PSSM for Jnet |
| jp_y8RePk5.results.html | 2016-02-15 12:21 | 151K | JPred results page |
| jp_y8RePk5.results_jalview.html | 2016-02-24 17:18 | 13K | Jalview results options |
| jp_y8RePk5.results_jalview_app.html | 2016-02-24 17:18 | 16K | HTML prediction and alignment data |
| jp_y8RePk5.seq | 2015-04-17 18:16 | 385 | Sequence data file |
| jp_y8RePk5.simple.html | 2015-04-17 20:12 | 2.1K | Brief HTML: sequence and prediction only |
![[TXT]](jp_y8RePk5.svg.html) | jp_y8RePk5.svg.html | 2015-04-17 20:14 | 143K | Jalview SVG summary of results |
| jp_y8RePk5.tar.gz | 2015-04-17 20:14 | 7.5M | Archive containing complete results |
