JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]d3o4pa_.name2015-04-17 19:30 0 Job name flag file
[ ]jp__NP3iDa.input2015-04-17 19:30 321 Raw input data for analysis
[ ]jp__NP3iDa.fasta2015-04-17 22:09 331 Input query sequence in FASTA format
[ ]jp__NP3iDa.seq2015-04-17 19:30 331 Sequence data file
[TXT]jp__NP3iDa.coils.csv2015-04-17 22:21 1.9KCOILS output in CSV format
[TXT]jp__NP3iDa.simple.html2015-04-17 22:22 2.1KBrief HTML: sequence and prediction only
[TXT]README2016-02-15 12:21 2.1KResults file descriptions
[TXT]LOG2015-04-17 22:23 4.7KJPred server log file
[TXT]jp__NP3iDa.als2015-04-17 22:22 4.9KAlscript command file for PS/PDF output
[ ]jp__NP3iDa.jalview2015-04-17 22:22 7.0KJalview annotation file for alignment
[ ]jp__NP3iDa.jnet2015-04-17 22:21 11KJnet secondary structure output
[ ]jp__NP3iDa.coilseq.lupas_142015-04-17 22:21 13KCOILS output, window length 14
[ ]jp__NP3iDa.coilseq.lupas_212015-04-17 22:21 13KCOILS output, window length 21
[ ]jp__NP3iDa.coilseq.lupas_282015-04-17 22:21 13KCOILS output, window length 28
[TXT]jp__NP3iDa.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp__NP3iDa.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[TXT]jp__NP3iDa.profile2015-04-17 22:16 50KPSIBLAST profile from alignment
[ ]jp__NP3iDa.hmm2015-04-17 22:21 59KHHMer2 profile of the alignment
[ ]jp__NP3iDa.pssm2015-04-17 22:21 67KPSIBLAST PSSM for Jnet
[TXT]jp__NP3iDa.svg.html2015-04-17 22:23 124KJalview SVG summary of results
[TXT]jp__NP3iDa.results.html2016-02-15 12:21 132KJPred results page
[ ]jp__NP3iDa.align2015-04-17 22:21 283KPSIBLAST alignment in FASTA format
[ ]jp__NP3iDa.concise.blc2015-04-17 22:22 284KBLC format prediction and alignment data
[ ]jp__NP3iDa.concise.fasta2015-04-17 22:22 287KPrediction: coiled-coil, solvent, alignment
[TXT]jp__NP3iDa.html2015-04-17 22:22 471KHTML prediction and alignment data
[ ]jp__NP3iDa.concise2015-04-17 22:21 563KPrediction: coiled-coil, solvent, alignment
[ ]jp__NP3iDa.concise.pdf2015-04-17 22:22 2.0MPDF prediction and alignment data
[TXT]jp__NP3iDa.full_MSA.fasta.noGaps.html2015-04-17 22:23 2.8MFull MSA before JPred filters in FASTA
[ ]jp__NP3iDa.blast.gz2015-04-17 22:19 21MCompressed PSIBLAST output file
[ ]jp__NP3iDa.full_MSA.fasta2015-04-17 22:20 31MFull MSA before JPred filters in FASTA
[ ]jp__NP3iDa.tar.gz2015-04-17 22:23 31MArchive containing complete results
[ ]jp__NP3iDa.concise.ps2015-04-17 22:22 35MPrediction: coiled-coil, solvent, alignment
[TXT]jp__NP3iDa.full_MSA.fasta.withGaps.html2015-04-17 22:23 80MFull MSA before JPred filters in FASTA
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.