JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 19:07 4.7KJPred server log file
[TXT]README2016-02-15 12:21 2.1KResults file descriptions
[TXT]d3og2a3.name2015-04-17 17:42 0 Job name flag file
[ ]jp_vtXuKKM.align2015-04-17 19:06 31KPSIBLAST alignment in FASTA format
[TXT]jp_vtXuKKM.als2015-04-17 19:06 2.4KAlscript command file for PS/PDF output
[ ]jp_vtXuKKM.blast.gz2015-04-17 19:06 93KCompressed PSIBLAST output file
[TXT]jp_vtXuKKM.coils.csv2015-04-17 19:06 612 COILS output in CSV format
[ ]jp_vtXuKKM.coilseq.lupas_142015-04-17 19:06 4.1KCOILS output, window length 14
[ ]jp_vtXuKKM.coilseq.lupas_212015-04-17 19:06 4.1KCOILS output, window length 21
[ ]jp_vtXuKKM.coilseq.lupas_282015-04-17 19:06 4.1KCOILS output, window length 28
[ ]jp_vtXuKKM.concise2015-04-17 19:06 63KPrediction: coiled-coil, solvent, alignment
[ ]jp_vtXuKKM.concise.blc2015-04-17 19:06 32KBLC format prediction and alignment data
[ ]jp_vtXuKKM.concise.fasta2015-04-17 19:06 32KPrediction: coiled-coil, solvent, alignment
[ ]jp_vtXuKKM.concise.pdf2015-04-17 19:06 196KPDF prediction and alignment data
[ ]jp_vtXuKKM.concise.ps2015-04-17 19:06 3.5MPrediction: coiled-coil, solvent, alignment
[ ]jp_vtXuKKM.fasta2015-04-17 19:04 111 Input query sequence in FASTA format
[ ]jp_vtXuKKM.full_MSA.fasta2015-04-17 19:06 128KFull MSA before JPred filters in FASTA
[TXT]jp_vtXuKKM.full_MSA.fasta.noGaps.html2015-04-17 19:06 83KFull MSA before JPred filters in FASTA
[TXT]jp_vtXuKKM.full_MSA.fasta.withGaps.html2015-04-17 19:06 673KFull MSA before JPred filters in FASTA
[ ]jp_vtXuKKM.hmm2015-04-17 19:06 18KHHMer2 profile of the alignment
[TXT]jp_vtXuKKM.html2015-04-17 19:06 94KHTML prediction and alignment data
[ ]jp_vtXuKKM.input2015-04-17 17:42 104 Raw input data for analysis
[ ]jp_vtXuKKM.jalview2015-04-17 19:06 2.7KJalview annotation file for alignment
[ ]jp_vtXuKKM.jnet2015-04-17 19:06 3.6KJnet secondary structure output
[TXT]jp_vtXuKKM.profile2015-04-17 19:05 16KPSIBLAST profile from alignment
[ ]jp_vtXuKKM.pssm2015-04-17 19:06 21KPSIBLAST PSSM for Jnet
[TXT]jp_vtXuKKM.results.html2016-02-15 12:21 48KJPred results page
[TXT]jp_vtXuKKM.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_vtXuKKM.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_vtXuKKM.seq2015-04-17 17:42 111 Sequence data file
[TXT]jp_vtXuKKM.simple.html2015-04-17 19:06 1.2KBrief HTML: sequence and prediction only
[TXT]jp_vtXuKKM.svg.html2015-04-17 19:07 40KJalview SVG summary of results
[ ]jp_vtXuKKM.tar.gz2015-04-17 19:07 424KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.