JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 18:13 4.7KJPred server log file
[TXT]README2016-02-15 12:21 2.1KResults file descriptions
[TXT]d3ojca1.name2015-04-17 17:04 0 Job name flag file
[ ]jp_9Mf5l9O.align2015-04-17 18:13 170KPSIBLAST alignment in FASTA format
[TXT]jp_9Mf5l9O.als2015-04-17 18:13 2.5KAlscript command file for PS/PDF output
[ ]jp_9Mf5l9O.blast.gz2015-04-17 18:11 712KCompressed PSIBLAST output file
[TXT]jp_9Mf5l9O.coils.csv2015-04-17 18:13 726 COILS output in CSV format
[ ]jp_9Mf5l9O.coilseq.lupas_142015-04-17 18:13 4.9KCOILS output, window length 14
[ ]jp_9Mf5l9O.coilseq.lupas_212015-04-17 18:13 4.9KCOILS output, window length 21
[ ]jp_9Mf5l9O.coilseq.lupas_282015-04-17 18:13 4.9KCOILS output, window length 28
[ ]jp_9Mf5l9O.concise2015-04-17 18:13 327KPrediction: coiled-coil, solvent, alignment
[ ]jp_9Mf5l9O.concise.blc2015-04-17 18:13 169KBLC format prediction and alignment data
[ ]jp_9Mf5l9O.concise.fasta2015-04-17 18:13 171KPrediction: coiled-coil, solvent, alignment
[ ]jp_9Mf5l9O.concise.pdf2015-04-17 18:13 1.1MPDF prediction and alignment data
[ ]jp_9Mf5l9O.concise.ps2015-04-17 18:13 20MPrediction: coiled-coil, solvent, alignment
[ ]jp_9Mf5l9O.fasta2015-04-17 18:04 130 Input query sequence in FASTA format
[ ]jp_9Mf5l9O.full_MSA.fasta2015-04-17 18:11 1.2MFull MSA before JPred filters in FASTA
[TXT]jp_9Mf5l9O.full_MSA.fasta.noGaps.html2015-04-17 18:13 488KFull MSA before JPred filters in FASTA
[TXT]jp_9Mf5l9O.full_MSA.fasta.withGaps.html2015-04-17 18:13 5.1MFull MSA before JPred filters in FASTA
[ ]jp_9Mf5l9O.hmm2015-04-17 18:13 22KHHMer2 profile of the alignment
[TXT]jp_9Mf5l9O.html2015-04-17 18:13 428KHTML prediction and alignment data
[ ]jp_9Mf5l9O.input2015-04-17 17:04 123 Raw input data for analysis
[ ]jp_9Mf5l9O.jalview2015-04-17 18:13 3.2KJalview annotation file for alignment
[ ]jp_9Mf5l9O.jnet2015-04-17 18:13 4.3KJnet secondary structure output
[TXT]jp_9Mf5l9O.profile2015-04-17 18:08 19KPSIBLAST profile from alignment
[ ]jp_9Mf5l9O.pssm2015-04-17 18:13 25KPSIBLAST PSSM for Jnet
[TXT]jp_9Mf5l9O.results.html2016-02-15 12:21 57KJPred results page
[TXT]jp_9Mf5l9O.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_9Mf5l9O.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_9Mf5l9O.seq2015-04-17 17:04 130 Sequence data file
[TXT]jp_9Mf5l9O.simple.html2015-04-17 18:13 1.3KBrief HTML: sequence and prediction only
[TXT]jp_9Mf5l9O.svg.html2015-04-17 18:13 49KJalview SVG summary of results
[ ]jp_9Mf5l9O.tar.gz2015-04-17 18:13 2.5MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.