JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 21:07 4.7KJPred server log file
[TXT]README2016-02-15 12:21 2.1KResults file descriptions
[TXT]d3os4a1.name2015-04-17 18:54 0 Job name flag file
[ ]jp_JVlzVLe.align2015-04-17 21:06 145KPSIBLAST alignment in FASTA format
[TXT]jp_JVlzVLe.als2015-04-17 21:06 2.5KAlscript command file for PS/PDF output
[ ]jp_JVlzVLe.blast.gz2015-04-17 21:06 1.1MCompressed PSIBLAST output file
[TXT]jp_JVlzVLe.coils.csv2015-04-17 21:06 858 COILS output in CSV format
[ ]jp_JVlzVLe.coilseq.lupas_142015-04-17 21:06 5.8KCOILS output, window length 14
[ ]jp_JVlzVLe.coilseq.lupas_212015-04-17 21:06 5.8KCOILS output, window length 21
[ ]jp_JVlzVLe.coilseq.lupas_282015-04-17 21:06 5.8KCOILS output, window length 28
[ ]jp_JVlzVLe.concise2015-04-17 21:06 284KPrediction: coiled-coil, solvent, alignment
[ ]jp_JVlzVLe.concise.blc2015-04-17 21:06 146KBLC format prediction and alignment data
[ ]jp_JVlzVLe.concise.fasta2015-04-17 21:06 147KPrediction: coiled-coil, solvent, alignment
[ ]jp_JVlzVLe.concise.pdf2015-04-17 21:07 959KPDF prediction and alignment data
[ ]jp_JVlzVLe.concise.ps2015-04-17 21:06 17MPrediction: coiled-coil, solvent, alignment
[ ]jp_JVlzVLe.fasta2015-04-17 21:01 152 Input query sequence in FASTA format
[ ]jp_JVlzVLe.full_MSA.fasta2015-04-17 21:06 2.5MFull MSA before JPred filters in FASTA
[TXT]jp_JVlzVLe.full_MSA.fasta.noGaps.html2015-04-17 21:07 756KFull MSA before JPred filters in FASTA
[TXT]jp_JVlzVLe.full_MSA.fasta.withGaps.html2015-04-17 21:07 9.0MFull MSA before JPred filters in FASTA
[ ]jp_JVlzVLe.hmm2015-04-17 21:06 26KHHMer2 profile of the alignment
[TXT]jp_JVlzVLe.html2015-04-17 21:06 342KHTML prediction and alignment data
[ ]jp_JVlzVLe.input2015-04-17 18:54 145 Raw input data for analysis
[ ]jp_JVlzVLe.jalview2015-04-17 21:06 3.6KJalview annotation file for alignment
[ ]jp_JVlzVLe.jnet2015-04-17 21:06 5.1KJnet secondary structure output
[TXT]jp_JVlzVLe.profile2015-04-17 21:04 22KPSIBLAST profile from alignment
[ ]jp_JVlzVLe.pssm2015-04-17 21:06 30KPSIBLAST PSSM for Jnet
[TXT]jp_JVlzVLe.results.html2016-02-15 12:21 65KJPred results page
[TXT]jp_JVlzVLe.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_JVlzVLe.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_JVlzVLe.seq2015-04-17 18:54 152 Sequence data file
[TXT]jp_JVlzVLe.simple.html2015-04-17 21:06 1.3KBrief HTML: sequence and prediction only
[TXT]jp_JVlzVLe.svg.html2015-04-17 21:07 57KJalview SVG summary of results
[ ]jp_JVlzVLe.tar.gz2015-04-17 21:07 3.2MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.