JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 20:08 4.7KJPred server log file
[TXT]README2016-02-15 12:21 2.1KResults file descriptions
[TXT]d3pmsa1.name2015-04-17 18:17 0 Job name flag file
[ ]jp_55RQTUT.align2015-04-17 20:08 12KPSIBLAST alignment in FASTA format
[TXT]jp_55RQTUT.als2015-04-17 20:08 2.6KAlscript command file for PS/PDF output
[ ]jp_55RQTUT.blast.gz2015-04-17 20:08 22KCompressed PSIBLAST output file
[TXT]jp_55RQTUT.coils.csv2015-04-17 20:08 852 COILS output in CSV format
[ ]jp_55RQTUT.coilseq.lupas_142015-04-17 20:08 5.8KCOILS output, window length 14
[ ]jp_55RQTUT.coilseq.lupas_212015-04-17 20:08 5.8KCOILS output, window length 21
[ ]jp_55RQTUT.coilseq.lupas_282015-04-17 20:08 5.8KCOILS output, window length 28
[ ]jp_55RQTUT.concise2015-04-17 20:08 29KPrediction: coiled-coil, solvent, alignment
[ ]jp_55RQTUT.concise.blc2015-04-17 20:08 14KBLC format prediction and alignment data
[ ]jp_55RQTUT.concise.fasta2015-04-17 20:08 13KPrediction: coiled-coil, solvent, alignment
[ ]jp_55RQTUT.concise.pdf2015-04-17 20:08 80KPDF prediction and alignment data
[ ]jp_55RQTUT.concise.ps2015-04-17 20:08 1.5MPrediction: coiled-coil, solvent, alignment
[ ]jp_55RQTUT.fasta2015-04-17 20:06 151 Input query sequence in FASTA format
[ ]jp_55RQTUT.full_MSA.fasta2015-04-17 20:08 45KFull MSA before JPred filters in FASTA
[TXT]jp_55RQTUT.full_MSA.fasta.noGaps.html2015-04-17 20:08 29KFull MSA before JPred filters in FASTA
[TXT]jp_55RQTUT.full_MSA.fasta.withGaps.html2015-04-17 20:08 194KFull MSA before JPred filters in FASTA
[ ]jp_55RQTUT.hmm2015-04-17 20:08 26KHHMer2 profile of the alignment
[TXT]jp_55RQTUT.html2015-04-17 20:08 40KHTML prediction and alignment data
[ ]jp_55RQTUT.input2015-04-17 18:17 144 Raw input data for analysis
[ ]jp_55RQTUT.jalview2015-04-17 20:08 3.6KJalview annotation file for alignment
[ ]jp_55RQTUT.jnet2015-04-17 20:08 5.1KJnet secondary structure output
[TXT]jp_55RQTUT.profile2015-04-17 20:07 22KPSIBLAST profile from alignment
[ ]jp_55RQTUT.pssm2015-04-17 20:08 29KPSIBLAST PSSM for Jnet
[TXT]jp_55RQTUT.results.html2016-02-15 12:21 64KJPred results page
[TXT]jp_55RQTUT.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_55RQTUT.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_55RQTUT.seq2015-04-17 18:17 151 Sequence data file
[TXT]jp_55RQTUT.simple.html2015-04-17 20:08 1.4KBrief HTML: sequence and prediction only
[TXT]jp_55RQTUT.svg.html2015-04-17 20:08 55KJalview SVG summary of results
[ ]jp_55RQTUT.tar.gz2015-04-17 20:08 169KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.