JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 16:27 4.7KJPred server log file
[TXT]README2016-02-15 12:21 2.1KResults file descriptions
[TXT]d3psma_.name2015-04-17 15:50 0 Job name flag file
[ ]jp_dRSl0FG.align2015-04-17 16:26 575 PSIBLAST alignment in FASTA format
[TXT]jp_dRSl0FG.als2015-04-17 16:26 1.6KAlscript command file for PS/PDF output
[ ]jp_dRSl0FG.blast.gz2015-04-17 16:26 2.8KCompressed PSIBLAST output file
[TXT]jp_dRSl0FG.coils.csv2015-04-17 16:26 312 COILS output in CSV format
[ ]jp_dRSl0FG.coilseq.lupas_142015-04-17 16:26 2.0KCOILS output, window length 14
[ ]jp_dRSl0FG.coilseq.lupas_212015-04-17 16:26 2.0KCOILS output, window length 21
[ ]jp_dRSl0FG.coilseq.lupas_282015-04-17 16:26 2.0KCOILS output, window length 28
[ ]jp_dRSl0FG.concise2015-04-17 16:26 3.1KPrediction: coiled-coil, solvent, alignment
[ ]jp_dRSl0FG.concise.blc2015-04-17 16:26 1.3KBLC format prediction and alignment data
[ ]jp_dRSl0FG.concise.fasta2015-04-17 16:26 1.1KPrediction: coiled-coil, solvent, alignment
[ ]jp_dRSl0FG.concise.pdf2015-04-17 16:26 8.5KPDF prediction and alignment data
[ ]jp_dRSl0FG.concise.ps2015-04-17 16:26 128KPrediction: coiled-coil, solvent, alignment
[ ]jp_dRSl0FG.fasta2015-04-17 16:05 60 Input query sequence in FASTA format
[ ]jp_dRSl0FG.full_MSA.fasta2015-04-17 16:26 1.5KFull MSA before JPred filters in FASTA
[TXT]jp_dRSl0FG.full_MSA.fasta.noGaps.html2015-04-17 16:26 4.0KFull MSA before JPred filters in FASTA
[TXT]jp_dRSl0FG.full_MSA.fasta.withGaps.html2015-04-17 16:26 5.7KFull MSA before JPred filters in FASTA
[ ]jp_dRSl0FG.hmm2015-04-17 16:26 8.8KHHMer2 profile of the alignment
[TXT]jp_dRSl0FG.html2015-04-17 16:26 6.7KHTML prediction and alignment data
[ ]jp_dRSl0FG.input2015-04-17 15:50 54 Raw input data for analysis
[ ]jp_dRSl0FG.jalview2015-04-17 16:26 1.7KJalview annotation file for alignment
[ ]jp_dRSl0FG.jnet2015-04-17 16:26 1.8KJnet secondary structure output
[TXT]jp_dRSl0FG.profile2015-04-17 16:20 7.9KPSIBLAST profile from alignment
[ ]jp_dRSl0FG.pssm2015-04-17 16:26 10KPSIBLAST PSSM for Jnet
[TXT]jp_dRSl0FG.results.html2016-02-15 12:21 30KJPred results page
[TXT]jp_dRSl0FG.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_dRSl0FG.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_dRSl0FG.seq2015-04-17 15:50 60 Sequence data file
[TXT]jp_dRSl0FG.simple.html2015-04-17 16:26 1.0KBrief HTML: sequence and prediction only
[TXT]jp_dRSl0FG.svg.html2015-04-17 16:27 22KJalview SVG summary of results
[ ]jp_dRSl0FG.tar.gz2015-04-17 16:27 29KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.