JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[ ]jp_BE3rElu.input2015-04-17 15:50 132 Raw input data for analysis
[ ]jp_BE3rElu.seq2015-04-17 15:50 139 Sequence data file
[TXT]d3rq7a1.name2015-04-17 15:50 0 Job name flag file
[ ]jp_BE3rElu.fasta2015-04-17 16:05 139 Input query sequence in FASTA format
[TXT]jp_BE3rElu.profile2015-04-17 16:06 20KPSIBLAST profile from alignment
[ ]jp_BE3rElu.blast.gz2015-04-17 16:07 393KCompressed PSIBLAST output file
[ ]jp_BE3rElu.full_MSA.fasta2015-04-17 16:07 632KFull MSA before JPred filters in FASTA
[ ]jp_BE3rElu.align2015-04-17 16:07 50KPSIBLAST alignment in FASTA format
[ ]jp_BE3rElu.pssm2015-04-17 16:07 27KPSIBLAST PSSM for Jnet
[ ]jp_BE3rElu.hmm2015-04-17 16:07 23KHHMer2 profile of the alignment
[ ]jp_BE3rElu.jnet2015-04-17 16:07 4.6KJnet secondary structure output
[ ]jp_BE3rElu.coilseq.lupas_212015-04-17 16:07 5.2KCOILS output, window length 21
[ ]jp_BE3rElu.coilseq.lupas_142015-04-17 16:07 5.2KCOILS output, window length 14
[ ]jp_BE3rElu.coilseq.lupas_282015-04-17 16:07 5.2KCOILS output, window length 28
[TXT]jp_BE3rElu.coils.csv2015-04-17 16:07 780 COILS output in CSV format
[ ]jp_BE3rElu.concise2015-04-17 16:07 101KPrediction: coiled-coil, solvent, alignment
[TXT]jp_BE3rElu.html2015-04-17 16:07 131KHTML prediction and alignment data
[TXT]jp_BE3rElu.simple.html2015-04-17 16:07 1.3KBrief HTML: sequence and prediction only
[ ]jp_BE3rElu.jalview2015-04-17 16:07 3.3KJalview annotation file for alignment
[ ]jp_BE3rElu.concise.fasta2015-04-17 16:07 51KPrediction: coiled-coil, solvent, alignment
[ ]jp_BE3rElu.concise.blc2015-04-17 16:07 51KBLC format prediction and alignment data
[TXT]jp_BE3rElu.als2015-04-17 16:07 2.4KAlscript command file for PS/PDF output
[ ]jp_BE3rElu.concise.ps2015-04-17 16:07 5.8MPrediction: coiled-coil, solvent, alignment
[ ]jp_BE3rElu.concise.pdf2015-04-17 16:07 314KPDF prediction and alignment data
[TXT]jp_BE3rElu.full_MSA.fasta.withGaps.html2015-04-17 16:07 1.9MFull MSA before JPred filters in FASTA
[TXT]jp_BE3rElu.full_MSA.fasta.noGaps.html2015-04-17 16:07 162KFull MSA before JPred filters in FASTA
[TXT]jp_BE3rElu.svg.html2015-04-17 16:07 51KJalview SVG summary of results
[TXT]LOG2015-04-17 16:07 4.7KJPred server log file
[ ]jp_BE3rElu.tar.gz2015-04-17 16:07 955KArchive containing complete results
[TXT]README2016-02-15 12:21 2.1KResults file descriptions
[TXT]jp_BE3rElu.results.html2016-02-15 12:21 59KJPred results page
[TXT]jp_BE3rElu.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_BE3rElu.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.