JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 20:11 4.7KJPred server log file
[TXT]README2016-02-15 12:21 2.1KResults file descriptions
[TXT]d3s4ya1.name2015-04-17 18:18 0 Job name flag file
[ ]jp_HKChYzb.align2015-04-17 20:11 137KPSIBLAST alignment in FASTA format
[TXT]jp_HKChYzb.als2015-04-17 20:11 2.9KAlscript command file for PS/PDF output
[ ]jp_HKChYzb.blast.gz2015-04-17 20:10 1.5MCompressed PSIBLAST output file
[TXT]jp_HKChYzb.coils.csv2015-04-17 20:11 888 COILS output in CSV format
[ ]jp_HKChYzb.coilseq.lupas_142015-04-17 20:11 6.0KCOILS output, window length 14
[ ]jp_HKChYzb.coilseq.lupas_212015-04-17 20:11 6.0KCOILS output, window length 21
[ ]jp_HKChYzb.coilseq.lupas_282015-04-17 20:11 6.0KCOILS output, window length 28
[ ]jp_HKChYzb.concise2015-04-17 20:11 268KPrediction: coiled-coil, solvent, alignment
[ ]jp_HKChYzb.concise.blc2015-04-17 20:11 137KBLC format prediction and alignment data
[ ]jp_HKChYzb.concise.fasta2015-04-17 20:11 138KPrediction: coiled-coil, solvent, alignment
[ ]jp_HKChYzb.concise.pdf2015-04-17 20:11 931KPDF prediction and alignment data
[ ]jp_HKChYzb.concise.ps2015-04-17 20:11 16MPrediction: coiled-coil, solvent, alignment
[ ]jp_HKChYzb.fasta2015-04-17 20:08 157 Input query sequence in FASTA format
[ ]jp_HKChYzb.full_MSA.fasta2015-04-17 20:10 3.5MFull MSA before JPred filters in FASTA
[TXT]jp_HKChYzb.full_MSA.fasta.noGaps.html2015-04-17 20:11 556KFull MSA before JPred filters in FASTA
[TXT]jp_HKChYzb.full_MSA.fasta.withGaps.html2015-04-17 20:11 9.4MFull MSA before JPred filters in FASTA
[ ]jp_HKChYzb.hmm2015-04-17 20:11 27KHHMer2 profile of the alignment
[TXT]jp_HKChYzb.html2015-04-17 20:11 318KHTML prediction and alignment data
[ ]jp_HKChYzb.input2015-04-17 18:18 150 Raw input data for analysis
[ ]jp_HKChYzb.jalview2015-04-17 20:11 3.7KJalview annotation file for alignment
[ ]jp_HKChYzb.jnet2015-04-17 20:11 5.3KJnet secondary structure output
[TXT]jp_HKChYzb.profile2015-04-17 20:10 23KPSIBLAST profile from alignment
[ ]jp_HKChYzb.pssm2015-04-17 20:11 31KPSIBLAST PSSM for Jnet
[TXT]jp_HKChYzb.results.html2016-02-15 12:21 68KJPred results page
[TXT]jp_HKChYzb.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_HKChYzb.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_HKChYzb.seq2015-04-17 18:18 157 Sequence data file
[TXT]jp_HKChYzb.simple.html2015-04-17 20:11 1.4KBrief HTML: sequence and prediction only
[TXT]jp_HKChYzb.svg.html2015-04-17 20:11 60KJalview SVG summary of results
[ ]jp_HKChYzb.tar.gz2015-04-17 20:11 3.6MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.