JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 17:22 4.7KJPred server log file
[TXT]README2016-02-15 12:21 2.1KResults file descriptions
[TXT]d3s8ga_.name2015-04-17 16:27 0 Job name flag file
[ ]jp_cuRub7H.align2015-04-17 17:21 106KPSIBLAST alignment in FASTA format
[TXT]jp_cuRub7H.als2015-04-17 17:21 5.4KAlscript command file for PS/PDF output
[ ]jp_cuRub7H.blast.gz2015-04-17 17:15 4.4MCompressed PSIBLAST output file
[TXT]jp_cuRub7H.coils.csv2015-04-17 17:21 3.3KCOILS output in CSV format
[ ]jp_cuRub7H.coilseq.lupas_142015-04-17 17:21 23KCOILS output, window length 14
[ ]jp_cuRub7H.coilseq.lupas_212015-04-17 17:21 23KCOILS output, window length 21
[ ]jp_cuRub7H.coilseq.lupas_282015-04-17 17:21 23KCOILS output, window length 28
[ ]jp_cuRub7H.concise2015-04-17 17:21 231KPrediction: coiled-coil, solvent, alignment
[ ]jp_cuRub7H.concise.blc2015-04-17 17:21 113KBLC format prediction and alignment data
[ ]jp_cuRub7H.concise.fasta2015-04-17 17:21 112KPrediction: coiled-coil, solvent, alignment
[ ]jp_cuRub7H.concise.pdf2015-04-17 17:21 648KPDF prediction and alignment data
[ ]jp_cuRub7H.concise.ps2015-04-17 17:21 13MPrediction: coiled-coil, solvent, alignment
[ ]jp_cuRub7H.fasta2015-04-17 17:01 574 Input query sequence in FASTA format
[ ]jp_cuRub7H.full_MSA.fasta2015-04-17 17:21 13MFull MSA before JPred filters in FASTA
[TXT]jp_cuRub7H.full_MSA.fasta.noGaps.html2015-04-17 17:21 6.6MFull MSA before JPred filters in FASTA
[TXT]jp_cuRub7H.full_MSA.fasta.withGaps.html2015-04-17 17:21 46MFull MSA before JPred filters in FASTA
[ ]jp_cuRub7H.hmm2015-04-17 17:21 104KHHMer2 profile of the alignment
[TXT]jp_cuRub7H.html2015-04-17 17:21 199KHTML prediction and alignment data
[ ]jp_cuRub7H.input2015-04-17 16:27 561 Raw input data for analysis
[ ]jp_cuRub7H.jalview2015-04-17 17:21 12KJalview annotation file for alignment
[ ]jp_cuRub7H.jnet2015-04-17 17:21 20KJnet secondary structure output
[TXT]jp_cuRub7H.profile2015-04-17 17:12 88KPSIBLAST profile from alignment
[ ]jp_cuRub7H.pssm2015-04-17 17:21 119KPSIBLAST PSSM for Jnet
[TXT]jp_cuRub7H.results.html2016-02-15 12:21 227KJPred results page
[TXT]jp_cuRub7H.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_cuRub7H.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_cuRub7H.seq2015-04-17 16:27 574 Sequence data file
[TXT]jp_cuRub7H.simple.html2015-04-17 17:21 2.6KBrief HTML: sequence and prediction only
[TXT]jp_cuRub7H.svg.html2015-04-17 17:21 219KJalview SVG summary of results
[ ]jp_cuRub7H.tar.gz2015-04-17 17:22 9.8MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.