JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 20:18 4.7KJPred server log file
[TXT]README2016-02-15 12:21 2.1KResults file descriptions
[TXT]d3s9za_.name2015-04-17 18:18 0 Job name flag file
[ ]jp_qzKk2v0.align2015-04-17 20:17 411KPSIBLAST alignment in FASTA format
[TXT]jp_qzKk2v0.als2015-04-17 20:17 7.9KAlscript command file for PS/PDF output
[ ]jp_qzKk2v0.blast.gz2015-04-17 20:16 3.0MCompressed PSIBLAST output file
[TXT]jp_qzKk2v0.coils.csv2015-04-17 20:17 4.2KCOILS output in CSV format
[ ]jp_qzKk2v0.coilseq.lupas_142015-04-17 20:17 30KCOILS output, window length 14
[ ]jp_qzKk2v0.coilseq.lupas_212015-04-17 20:17 30KCOILS output, window length 21
[ ]jp_qzKk2v0.coilseq.lupas_282015-04-17 20:17 30KCOILS output, window length 28
[ ]jp_qzKk2v0.concise2015-04-17 20:17 835KPrediction: coiled-coil, solvent, alignment
[ ]jp_qzKk2v0.concise.blc2015-04-17 20:17 416KBLC format prediction and alignment data
[ ]jp_qzKk2v0.concise.fasta2015-04-17 20:17 418KPrediction: coiled-coil, solvent, alignment
[ ]jp_qzKk2v0.concise.pdf2015-04-17 20:18 2.6MPDF prediction and alignment data
[ ]jp_qzKk2v0.concise.ps2015-04-17 20:17 51MPrediction: coiled-coil, solvent, alignment
[ ]jp_qzKk2v0.fasta2015-04-17 20:08 737 Input query sequence in FASTA format
[ ]jp_qzKk2v0.full_MSA.fasta2015-04-17 20:17 5.6MFull MSA before JPred filters in FASTA
[TXT]jp_qzKk2v0.full_MSA.fasta.noGaps.html2015-04-17 20:18 1.8MFull MSA before JPred filters in FASTA
[TXT]jp_qzKk2v0.full_MSA.fasta.withGaps.html2015-04-17 20:18 25MFull MSA before JPred filters in FASTA
[ ]jp_qzKk2v0.hmm2015-04-17 20:17 134KHHMer2 profile of the alignment
[TXT]jp_qzKk2v0.html2015-04-17 20:17 581KHTML prediction and alignment data
[ ]jp_qzKk2v0.input2015-04-17 18:18 722 Raw input data for analysis
[ ]jp_qzKk2v0.jalview2015-04-17 20:17 15KJalview annotation file for alignment
[ ]jp_qzKk2v0.jnet2015-04-17 20:17 26KJnet secondary structure output
[TXT]jp_qzKk2v0.profile2015-04-17 20:13 114KPSIBLAST profile from alignment
[ ]jp_qzKk2v0.pssm2015-04-17 20:17 154KPSIBLAST PSSM for Jnet
[TXT]jp_qzKk2v0.results.html2016-02-15 12:21 293KJPred results page
[TXT]jp_qzKk2v0.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_qzKk2v0.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_qzKk2v0.seq2015-04-17 18:18 737 Sequence data file
[TXT]jp_qzKk2v0.simple.html2015-04-17 20:17 3.4KBrief HTML: sequence and prediction only
[TXT]jp_qzKk2v0.svg.html2015-04-17 20:18 285KJalview SVG summary of results
[ ]jp_qzKk2v0.tar.gz2015-04-17 20:18 8.3MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.