JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 22:20 4.7KJPred server log file
[TXT]README2016-02-15 12:21 2.1KResults file descriptions
[TXT]d3t0ha_.name2015-04-17 19:32 0 Job name flag file
[ ]jp_3i3gkTL.align2015-04-17 22:20 159KPSIBLAST alignment in FASTA format
[TXT]jp_3i3gkTL.als2015-04-17 22:20 3.9KAlscript command file for PS/PDF output
[ ]jp_3i3gkTL.blast.gz2015-04-17 22:19 3.7MCompressed PSIBLAST output file
[TXT]jp_3i3gkTL.coils.csv2015-04-17 22:20 1.2KCOILS output in CSV format
[ ]jp_3i3gkTL.coilseq.lupas_142015-04-17 22:20 8.7KCOILS output, window length 14
[ ]jp_3i3gkTL.coilseq.lupas_212015-04-17 22:20 8.7KCOILS output, window length 21
[ ]jp_3i3gkTL.coilseq.lupas_282015-04-17 22:20 8.7KCOILS output, window length 28
[ ]jp_3i3gkTL.concise2015-04-17 22:20 316KPrediction: coiled-coil, solvent, alignment
[ ]jp_3i3gkTL.concise.blc2015-04-17 22:20 160KBLC format prediction and alignment data
[ ]jp_3i3gkTL.concise.fasta2015-04-17 22:20 161KPrediction: coiled-coil, solvent, alignment
[ ]jp_3i3gkTL.concise.pdf2015-04-17 22:20 1.0MPDF prediction and alignment data
[ ]jp_3i3gkTL.concise.ps2015-04-17 22:20 19MPrediction: coiled-coil, solvent, alignment
[ ]jp_3i3gkTL.fasta2015-04-17 22:13 223 Input query sequence in FASTA format
[ ]jp_3i3gkTL.full_MSA.fasta2015-04-17 22:19 6.7MFull MSA before JPred filters in FASTA
[TXT]jp_3i3gkTL.full_MSA.fasta.noGaps.html2015-04-17 22:20 1.2MFull MSA before JPred filters in FASTA
[TXT]jp_3i3gkTL.full_MSA.fasta.withGaps.html2015-04-17 22:20 21MFull MSA before JPred filters in FASTA
[ ]jp_3i3gkTL.hmm2015-04-17 22:20 39KHHMer2 profile of the alignment
[TXT]jp_3i3gkTL.html2015-04-17 22:20 315KHTML prediction and alignment data
[ ]jp_3i3gkTL.input2015-04-17 19:32 215 Raw input data for analysis
[ ]jp_3i3gkTL.jalview2015-04-17 22:20 5.0KJalview annotation file for alignment
[ ]jp_3i3gkTL.jnet2015-04-17 22:20 7.6KJnet secondary structure output
[TXT]jp_3i3gkTL.profile2015-04-17 22:16 33KPSIBLAST profile from alignment
[ ]jp_3i3gkTL.pssm2015-04-17 22:20 45KPSIBLAST PSSM for Jnet
[TXT]jp_3i3gkTL.results.html2016-02-15 12:21 95KJPred results page
[TXT]jp_3i3gkTL.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_3i3gkTL.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_3i3gkTL.seq2015-04-17 19:32 223 Sequence data file
[TXT]jp_3i3gkTL.simple.html2015-04-17 22:20 1.7KBrief HTML: sequence and prediction only
[TXT]jp_3i3gkTL.svg.html2015-04-17 22:20 87KJalview SVG summary of results
[ ]jp_3i3gkTL.tar.gz2015-04-17 22:20 6.8MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.