JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 16:11 4.7KJPred server log file
[TXT]README2016-02-15 12:21 2.1KResults file descriptions
[TXT]d3t63a_.name2015-04-17 15:51 0 Job name flag file
[ ]jp_f4SzIdA.align2015-04-17 16:11 201KPSIBLAST alignment in FASTA format
[TXT]jp_f4SzIdA.als2015-04-17 16:11 2.7KAlscript command file for PS/PDF output
[ ]jp_f4SzIdA.blast.gz2015-04-17 16:10 3.0MCompressed PSIBLAST output file
[TXT]jp_f4SzIdA.coils.csv2015-04-17 16:11 1.2KCOILS output in CSV format
[ ]jp_f4SzIdA.coilseq.lupas_142015-04-17 16:11 8.4KCOILS output, window length 14
[ ]jp_f4SzIdA.coilseq.lupas_212015-04-17 16:11 8.4KCOILS output, window length 21
[ ]jp_f4SzIdA.coilseq.lupas_282015-04-17 16:11 8.4KCOILS output, window length 28
[ ]jp_f4SzIdA.concise2015-04-17 16:11 396KPrediction: coiled-coil, solvent, alignment
[ ]jp_f4SzIdA.concise.blc2015-04-17 16:11 201KBLC format prediction and alignment data
[ ]jp_f4SzIdA.concise.fasta2015-04-17 16:11 203KPrediction: coiled-coil, solvent, alignment
[ ]jp_f4SzIdA.concise.pdf2015-04-17 16:11 1.3MPDF prediction and alignment data
[ ]jp_f4SzIdA.concise.ps2015-04-17 16:11 23MPrediction: coiled-coil, solvent, alignment
[ ]jp_f4SzIdA.fasta2015-04-17 16:06 215 Input query sequence in FASTA format
[ ]jp_f4SzIdA.full_MSA.fasta2015-04-17 16:10 7.6MFull MSA before JPred filters in FASTA
[TXT]jp_f4SzIdA.full_MSA.fasta.noGaps.html2015-04-17 16:11 1.1MFull MSA before JPred filters in FASTA
[TXT]jp_f4SzIdA.full_MSA.fasta.withGaps.html2015-04-17 16:11 23MFull MSA before JPred filters in FASTA
[ ]jp_f4SzIdA.hmm2015-04-17 16:11 38KHHMer2 profile of the alignment
[TXT]jp_f4SzIdA.html2015-04-17 16:11 394KHTML prediction and alignment data
[ ]jp_f4SzIdA.input2015-04-17 15:51 207 Raw input data for analysis
[ ]jp_f4SzIdA.jalview2015-04-17 16:11 4.7KJalview annotation file for alignment
[ ]jp_f4SzIdA.jnet2015-04-17 16:11 7.3KJnet secondary structure output
[TXT]jp_f4SzIdA.profile2015-04-17 16:09 32KPSIBLAST profile from alignment
[ ]jp_f4SzIdA.pssm2015-04-17 16:11 43KPSIBLAST PSSM for Jnet
[TXT]jp_f4SzIdA.results.html2016-02-15 12:21 85KJPred results page
[TXT]jp_f4SzIdA.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_f4SzIdA.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_f4SzIdA.seq2015-04-17 15:51 215 Sequence data file
[TXT]jp_f4SzIdA.simple.html2015-04-17 16:11 1.5KBrief HTML: sequence and prediction only
[TXT]jp_f4SzIdA.svg.html2015-04-17 16:11 77KJalview SVG summary of results
[ ]jp_f4SzIdA.tar.gz2015-04-17 16:11 6.6MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.