JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 16:11 4.7KJPred server log file
[TXT]README2016-02-15 12:21 2.1KResults file descriptions
[TXT]d3tvji_.name2015-04-17 15:51 0 Job name flag file
[ ]jp_KV6Z3l3.align2015-04-17 16:10 361 PSIBLAST alignment in FASTA format
[TXT]jp_KV6Z3l3.als2015-04-17 16:10 1.7KAlscript command file for PS/PDF output
[ ]jp_KV6Z3l3.blast.gz2015-04-17 16:10 2.8KCompressed PSIBLAST output file
[TXT]jp_KV6Z3l3.coils.csv2015-04-17 16:10 240 COILS output in CSV format
[ ]jp_KV6Z3l3.coilseq.lupas_142015-04-17 16:10 1.5KCOILS output, window length 14
[ ]jp_KV6Z3l3.coilseq.lupas_212015-04-17 16:10 1.5KCOILS output, window length 21
[ ]jp_KV6Z3l3.coilseq.lupas_282015-04-17 16:10 1.5KCOILS output, window length 28
[ ]jp_KV6Z3l3.concise2015-04-17 16:10 2.2KPrediction: coiled-coil, solvent, alignment
[ ]jp_KV6Z3l3.concise.blc2015-04-17 16:10 1.0KBLC format prediction and alignment data
[ ]jp_KV6Z3l3.concise.fasta2015-04-17 16:10 821 Prediction: coiled-coil, solvent, alignment
[ ]jp_KV6Z3l3.concise.pdf2015-04-17 16:10 6.7KPDF prediction and alignment data
[ ]jp_KV6Z3l3.concise.ps2015-04-17 16:10 89KPrediction: coiled-coil, solvent, alignment
[ ]jp_KV6Z3l3.fasta2015-04-17 16:06 48 Input query sequence in FASTA format
[ ]jp_KV6Z3l3.full_MSA.fasta2015-04-17 16:10 922 Full MSA before JPred filters in FASTA
[TXT]jp_KV6Z3l3.full_MSA.fasta.noGaps.html2015-04-17 16:10 2.9KFull MSA before JPred filters in FASTA
[TXT]jp_KV6Z3l3.full_MSA.fasta.withGaps.html2015-04-17 16:10 2.9KFull MSA before JPred filters in FASTA
[ ]jp_KV6Z3l3.hmm2015-04-17 16:10 6.6KHHMer2 profile of the alignment
[TXT]jp_KV6Z3l3.html2015-04-17 16:10 5.7KHTML prediction and alignment data
[ ]jp_KV6Z3l3.input2015-04-17 15:51 42 Raw input data for analysis
[ ]jp_KV6Z3l3.jalview2015-04-17 16:10 1.5KJalview annotation file for alignment
[ ]jp_KV6Z3l3.jnet2015-04-17 16:10 1.4KJnet secondary structure output
[TXT]jp_KV6Z3l3.profile2015-04-17 16:09 6.0KPSIBLAST profile from alignment
[ ]jp_KV6Z3l3.pssm2015-04-17 16:10 7.5KPSIBLAST PSSM for Jnet
[TXT]jp_KV6Z3l3.results.html2016-02-15 12:21 25KJPred results page
[TXT]jp_KV6Z3l3.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_KV6Z3l3.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_KV6Z3l3.seq2015-04-17 15:51 48 Sequence data file
[TXT]jp_KV6Z3l3.simple.html2015-04-17 16:10 1.0KBrief HTML: sequence and prediction only
[TXT]jp_KV6Z3l3.svg.html2015-04-17 16:11 17KJalview SVG summary of results
[ ]jp_KV6Z3l3.tar.gz2015-04-17 16:11 24KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.