JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 22:18 4.7KJPred server log file
[TXT]README2016-02-15 12:21 2.1KResults file descriptions
[TXT]d3u1ua_.name2015-04-17 19:32 0 Job name flag file
[ ]jp_czkgg7Y.align2015-04-17 22:18 64KPSIBLAST alignment in FASTA format
[TXT]jp_czkgg7Y.als2015-04-17 22:18 2.8KAlscript command file for PS/PDF output
[ ]jp_czkgg7Y.blast.gz2015-04-17 22:18 391KCompressed PSIBLAST output file
[TXT]jp_czkgg7Y.coils.csv2015-04-17 22:18 816 COILS output in CSV format
[ ]jp_czkgg7Y.coilseq.lupas_142015-04-17 22:18 5.5KCOILS output, window length 14
[ ]jp_czkgg7Y.coilseq.lupas_212015-04-17 22:18 5.5KCOILS output, window length 21
[ ]jp_czkgg7Y.coilseq.lupas_282015-04-17 22:18 5.5KCOILS output, window length 28
[ ]jp_czkgg7Y.concise2015-04-17 22:18 127KPrediction: coiled-coil, solvent, alignment
[ ]jp_czkgg7Y.concise.blc2015-04-17 22:18 65KBLC format prediction and alignment data
[ ]jp_czkgg7Y.concise.fasta2015-04-17 22:18 65KPrediction: coiled-coil, solvent, alignment
[ ]jp_czkgg7Y.concise.pdf2015-04-17 22:18 440KPDF prediction and alignment data
[ ]jp_czkgg7Y.concise.ps2015-04-17 22:18 7.7MPrediction: coiled-coil, solvent, alignment
[ ]jp_czkgg7Y.fasta2015-04-17 22:13 145 Input query sequence in FASTA format
[ ]jp_czkgg7Y.full_MSA.fasta2015-04-17 22:18 618KFull MSA before JPred filters in FASTA
[TXT]jp_czkgg7Y.full_MSA.fasta.noGaps.html2015-04-17 22:18 195KFull MSA before JPred filters in FASTA
[TXT]jp_czkgg7Y.full_MSA.fasta.withGaps.html2015-04-17 22:18 2.2MFull MSA before JPred filters in FASTA
[ ]jp_czkgg7Y.hmm2015-04-17 22:18 25KHHMer2 profile of the alignment
[TXT]jp_czkgg7Y.html2015-04-17 22:18 161KHTML prediction and alignment data
[ ]jp_czkgg7Y.input2015-04-17 19:32 138 Raw input data for analysis
[ ]jp_czkgg7Y.jalview2015-04-17 22:18 3.5KJalview annotation file for alignment
[ ]jp_czkgg7Y.jnet2015-04-17 22:18 4.8KJnet secondary structure output
[TXT]jp_czkgg7Y.profile2015-04-17 22:16 21KPSIBLAST profile from alignment
[ ]jp_czkgg7Y.pssm2015-04-17 22:18 28KPSIBLAST PSSM for Jnet
[TXT]jp_czkgg7Y.results.html2016-02-15 12:21 63KJPred results page
[TXT]jp_czkgg7Y.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_czkgg7Y.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_czkgg7Y.seq2015-04-17 19:32 145 Sequence data file
[TXT]jp_czkgg7Y.simple.html2015-04-17 22:18 1.4KBrief HTML: sequence and prediction only
[TXT]jp_czkgg7Y.svg.html2015-04-17 22:18 54KJalview SVG summary of results
[ ]jp_czkgg7Y.tar.gz2015-04-17 22:18 1.2MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.