JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 17:09 4.7KJPred server log file
[TXT]README2016-02-15 12:21 2.1KResults file descriptions
[TXT]d3umha_.name2015-04-17 16:28 0 Job name flag file
[ ]jp_CApbj_d.align2015-04-17 17:09 14KPSIBLAST alignment in FASTA format
[TXT]jp_CApbj_d.als2015-04-17 17:09 1.8KAlscript command file for PS/PDF output
[ ]jp_CApbj_d.blast.gz2015-04-17 17:08 103KCompressed PSIBLAST output file
[TXT]jp_CApbj_d.coils.csv2015-04-17 17:09 1.1KCOILS output in CSV format
[ ]jp_CApbj_d.coilseq.lupas_142015-04-17 17:09 7.6KCOILS output, window length 14
[ ]jp_CApbj_d.coilseq.lupas_212015-04-17 17:09 7.6KCOILS output, window length 21
[ ]jp_CApbj_d.coilseq.lupas_282015-04-17 17:09 7.6KCOILS output, window length 28
[ ]jp_CApbj_d.concise2015-04-17 17:09 35KPrediction: coiled-coil, solvent, alignment
[ ]jp_CApbj_d.concise.blc2015-04-17 17:09 17KBLC format prediction and alignment data
[ ]jp_CApbj_d.concise.fasta2015-04-17 17:09 16KPrediction: coiled-coil, solvent, alignment
[ ]jp_CApbj_d.concise.pdf2015-04-17 17:09 110KPDF prediction and alignment data
[ ]jp_CApbj_d.concise.ps2015-04-17 17:09 2.0MPrediction: coiled-coil, solvent, alignment
[ ]jp_CApbj_d.fasta2015-04-17 17:01 195 Input query sequence in FASTA format
[ ]jp_CApbj_d.full_MSA.fasta2015-04-17 17:09 162KFull MSA before JPred filters in FASTA
[TXT]jp_CApbj_d.full_MSA.fasta.noGaps.html2015-04-17 17:09 101KFull MSA before JPred filters in FASTA
[TXT]jp_CApbj_d.full_MSA.fasta.withGaps.html2015-04-17 17:09 485KFull MSA before JPred filters in FASTA
[ ]jp_CApbj_d.hmm2015-04-17 17:09 34KHHMer2 profile of the alignment
[TXT]jp_CApbj_d.html2015-04-17 17:09 52KHTML prediction and alignment data
[ ]jp_CApbj_d.input2015-04-17 16:28 187 Raw input data for analysis
[ ]jp_CApbj_d.jalview2015-04-17 17:09 4.6KJalview annotation file for alignment
[ ]jp_CApbj_d.jnet2015-04-17 17:09 6.6KJnet secondary structure output
[TXT]jp_CApbj_d.profile2015-04-17 17:06 29KPSIBLAST profile from alignment
[ ]jp_CApbj_d.pssm2015-04-17 17:09 39KPSIBLAST PSSM for Jnet
[TXT]jp_CApbj_d.results.html2016-02-15 12:21 77KJPred results page
[TXT]jp_CApbj_d.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_CApbj_d.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_CApbj_d.seq2015-04-17 16:28 195 Sequence data file
[TXT]jp_CApbj_d.simple.html2015-04-17 17:09 1.3KBrief HTML: sequence and prediction only
[TXT]jp_CApbj_d.svg.html2015-04-17 17:09 69KJalview SVG summary of results
[ ]jp_CApbj_d.tar.gz2015-04-17 17:09 303KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.