JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 21:08 4.7KJPred server log file
[TXT]README2016-02-15 12:21 2.1KResults file descriptions
[TXT]d3vdpa_.name2015-04-17 18:56 0 Job name flag file
[ ]jp_g4hGrLm.align2015-04-17 21:07 170KPSIBLAST alignment in FASTA format
[TXT]jp_g4hGrLm.als2015-04-17 21:07 3.0KAlscript command file for PS/PDF output
[ ]jp_g4hGrLm.blast.gz2015-04-17 21:06 1.3MCompressed PSIBLAST output file
[TXT]jp_g4hGrLm.coils.csv2015-04-17 21:07 1.2KCOILS output in CSV format
[ ]jp_g4hGrLm.coilseq.lupas_142015-04-17 21:07 8.3KCOILS output, window length 14
[ ]jp_g4hGrLm.coilseq.lupas_212015-04-17 21:07 8.3KCOILS output, window length 21
[ ]jp_g4hGrLm.coilseq.lupas_282015-04-17 21:07 8.3KCOILS output, window length 28
[ ]jp_g4hGrLm.concise2015-04-17 21:07 335KPrediction: coiled-coil, solvent, alignment
[ ]jp_g4hGrLm.concise.blc2015-04-17 21:07 170KBLC format prediction and alignment data
[ ]jp_g4hGrLm.concise.fasta2015-04-17 21:07 172KPrediction: coiled-coil, solvent, alignment
[ ]jp_g4hGrLm.concise.pdf2015-04-17 21:07 1.2MPDF prediction and alignment data
[ ]jp_g4hGrLm.concise.ps2015-04-17 21:07 21MPrediction: coiled-coil, solvent, alignment
[ ]jp_g4hGrLm.fasta2015-04-17 21:02 212 Input query sequence in FASTA format
[ ]jp_g4hGrLm.full_MSA.fasta2015-04-17 21:06 1.5MFull MSA before JPred filters in FASTA
[TXT]jp_g4hGrLm.full_MSA.fasta.noGaps.html2015-04-17 21:07 880KFull MSA before JPred filters in FASTA
[TXT]jp_g4hGrLm.full_MSA.fasta.withGaps.html2015-04-17 21:07 6.0MFull MSA before JPred filters in FASTA
[ ]jp_g4hGrLm.hmm2015-04-17 21:07 37KHHMer2 profile of the alignment
[TXT]jp_g4hGrLm.html2015-04-17 21:07 342KHTML prediction and alignment data
[ ]jp_g4hGrLm.input2015-04-17 18:56 204 Raw input data for analysis
[ ]jp_g4hGrLm.jalview2015-04-17 21:07 4.8KJalview annotation file for alignment
[ ]jp_g4hGrLm.jnet2015-04-17 21:07 7.2KJnet secondary structure output
[TXT]jp_g4hGrLm.profile2015-04-17 21:05 32KPSIBLAST profile from alignment
[ ]jp_g4hGrLm.pssm2015-04-17 21:07 42KPSIBLAST PSSM for Jnet
[TXT]jp_g4hGrLm.results.html2016-02-15 12:21 88KJPred results page
[TXT]jp_g4hGrLm.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_g4hGrLm.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_g4hGrLm.seq2015-04-17 18:56 212 Sequence data file
[TXT]jp_g4hGrLm.simple.html2015-04-17 21:07 1.5KBrief HTML: sequence and prediction only
[TXT]jp_g4hGrLm.svg.html2015-04-17 21:07 79KJalview SVG summary of results
[ ]jp_g4hGrLm.tar.gz2015-04-17 21:08 3.5MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.