JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 18:44 4.7KJPred server log file
[TXT]README2016-02-15 12:21 2.1KResults file descriptions
[TXT]d3w07a_.name2015-04-17 17:06 0 Job name flag file
[ ]jp_1_Xundm.align2015-04-17 18:43 206KPSIBLAST alignment in FASTA format
[TXT]jp_1_Xundm.als2015-04-17 18:43 3.9KAlscript command file for PS/PDF output
[ ]jp_1_Xundm.blast.gz2015-04-17 18:41 6.5MCompressed PSIBLAST output file
[TXT]jp_1_Xundm.coils.csv2015-04-17 18:43 1.3KCOILS output in CSV format
[ ]jp_1_Xundm.coilseq.lupas_142015-04-17 18:43 9.0KCOILS output, window length 14
[ ]jp_1_Xundm.coilseq.lupas_212015-04-17 18:43 9.0KCOILS output, window length 21
[ ]jp_1_Xundm.coilseq.lupas_282015-04-17 18:43 9.0KCOILS output, window length 28
[ ]jp_1_Xundm.concise2015-04-17 18:43 407KPrediction: coiled-coil, solvent, alignment
[ ]jp_1_Xundm.concise.blc2015-04-17 18:43 206KBLC format prediction and alignment data
[ ]jp_1_Xundm.concise.fasta2015-04-17 18:43 208KPrediction: coiled-coil, solvent, alignment
[ ]jp_1_Xundm.concise.pdf2015-04-17 18:44 1.5MPDF prediction and alignment data
[ ]jp_1_Xundm.concise.ps2015-04-17 18:43 26MPrediction: coiled-coil, solvent, alignment
[ ]jp_1_Xundm.fasta2015-04-17 18:07 230 Input query sequence in FASTA format
[ ]jp_1_Xundm.full_MSA.fasta2015-04-17 18:42 15MFull MSA before JPred filters in FASTA
[TXT]jp_1_Xundm.full_MSA.fasta.noGaps.html2015-04-17 18:44 1.7MFull MSA before JPred filters in FASTA
[TXT]jp_1_Xundm.full_MSA.fasta.withGaps.html2015-04-17 18:44 40MFull MSA before JPred filters in FASTA
[ ]jp_1_Xundm.hmm2015-04-17 18:43 40KHHMer2 profile of the alignment
[TXT]jp_1_Xundm.html2015-04-17 18:43 399KHTML prediction and alignment data
[ ]jp_1_Xundm.input2015-04-17 17:06 222 Raw input data for analysis
[ ]jp_1_Xundm.jalview2015-04-17 18:43 5.2KJalview annotation file for alignment
[ ]jp_1_Xundm.jnet2015-04-17 18:43 7.9KJnet secondary structure output
[TXT]jp_1_Xundm.profile2015-04-17 18:27 35KPSIBLAST profile from alignment
[ ]jp_1_Xundm.pssm2015-04-17 18:43 46KPSIBLAST PSSM for Jnet
[TXT]jp_1_Xundm.results.html2016-02-15 12:21 98KJPred results page
[TXT]jp_1_Xundm.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_1_Xundm.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_1_Xundm.seq2015-04-17 17:06 230 Sequence data file
[TXT]jp_1_Xundm.simple.html2015-04-17 18:43 1.7KBrief HTML: sequence and prediction only
[TXT]jp_1_Xundm.svg.html2015-04-17 18:44 90KJalview SVG summary of results
[ ]jp_1_Xundm.tar.gz2015-04-17 18:45 13MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.