JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 21:10 4.7KJPred server log file
[TXT]README2016-02-15 12:21 2.1KResults file descriptions
[TXT]d3w5ha1.name2015-04-17 18:56 0 Job name flag file
[ ]jp_ubm8gZg.align2015-04-17 21:09 127KPSIBLAST alignment in FASTA format
[TXT]jp_ubm8gZg.als2015-04-17 21:09 2.4KAlscript command file for PS/PDF output
[ ]jp_ubm8gZg.blast.gz2015-04-17 21:08 3.6MCompressed PSIBLAST output file
[TXT]jp_ubm8gZg.coils.csv2015-04-17 21:09 780 COILS output in CSV format
[ ]jp_ubm8gZg.coilseq.lupas_142015-04-17 21:09 5.2KCOILS output, window length 14
[ ]jp_ubm8gZg.coilseq.lupas_212015-04-17 21:09 5.2KCOILS output, window length 21
[ ]jp_ubm8gZg.coilseq.lupas_282015-04-17 21:09 5.2KCOILS output, window length 28
[ ]jp_ubm8gZg.concise2015-04-17 21:09 248KPrediction: coiled-coil, solvent, alignment
[ ]jp_ubm8gZg.concise.blc2015-04-17 21:09 128KBLC format prediction and alignment data
[ ]jp_ubm8gZg.concise.fasta2015-04-17 21:09 129KPrediction: coiled-coil, solvent, alignment
[ ]jp_ubm8gZg.concise.pdf2015-04-17 21:09 859KPDF prediction and alignment data
[ ]jp_ubm8gZg.concise.ps2015-04-17 21:09 15MPrediction: coiled-coil, solvent, alignment
[ ]jp_ubm8gZg.fasta2015-04-17 21:03 139 Input query sequence in FASTA format
[ ]jp_ubm8gZg.full_MSA.fasta2015-04-17 21:09 11MFull MSA before JPred filters in FASTA
[TXT]jp_ubm8gZg.full_MSA.fasta.noGaps.html2015-04-17 21:10 1.8MFull MSA before JPred filters in FASTA
[TXT]jp_ubm8gZg.full_MSA.fasta.withGaps.html2015-04-17 21:10 33MFull MSA before JPred filters in FASTA
[ ]jp_ubm8gZg.hmm2015-04-17 21:09 23KHHMer2 profile of the alignment
[TXT]jp_ubm8gZg.html2015-04-17 21:09 311KHTML prediction and alignment data
[ ]jp_ubm8gZg.input2015-04-17 18:56 132 Raw input data for analysis
[ ]jp_ubm8gZg.jalview2015-04-17 21:09 3.3KJalview annotation file for alignment
[ ]jp_ubm8gZg.jnet2015-04-17 21:09 4.6KJnet secondary structure output
[TXT]jp_ubm8gZg.profile2015-04-17 21:07 20KPSIBLAST profile from alignment
[ ]jp_ubm8gZg.pssm2015-04-17 21:09 27KPSIBLAST PSSM for Jnet
[TXT]jp_ubm8gZg.results.html2016-02-15 12:21 59KJPred results page
[TXT]jp_ubm8gZg.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_ubm8gZg.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_ubm8gZg.seq2015-04-17 18:56 139 Sequence data file
[TXT]jp_ubm8gZg.simple.html2015-04-17 21:09 1.3KBrief HTML: sequence and prediction only
[TXT]jp_ubm8gZg.svg.html2015-04-17 21:10 50KJalview SVG summary of results
[ ]jp_ubm8gZg.tar.gz2015-04-17 21:10 7.8MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.