JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 17:13 4.7KJPred server log file
[TXT]README2016-02-15 12:21 2.1KResults file descriptions
[TXT]d3w5ha2.name2015-04-17 16:28 0 Job name flag file
[ ]jp_WawvSvz.align2015-04-17 17:12 148KPSIBLAST alignment in FASTA format
[TXT]jp_WawvSvz.als2015-04-17 17:12 2.7KAlscript command file for PS/PDF output
[ ]jp_WawvSvz.blast.gz2015-04-17 17:10 9.7MCompressed PSIBLAST output file
[TXT]jp_WawvSvz.coils.csv2015-04-17 17:12 912 COILS output in CSV format
[ ]jp_WawvSvz.coilseq.lupas_142015-04-17 17:12 6.2KCOILS output, window length 14
[ ]jp_WawvSvz.coilseq.lupas_212015-04-17 17:12 6.2KCOILS output, window length 21
[ ]jp_WawvSvz.coilseq.lupas_282015-04-17 17:12 6.2KCOILS output, window length 28
[ ]jp_WawvSvz.concise2015-04-17 17:12 288KPrediction: coiled-coil, solvent, alignment
[ ]jp_WawvSvz.concise.blc2015-04-17 17:12 148KBLC format prediction and alignment data
[ ]jp_WawvSvz.concise.fasta2015-04-17 17:12 150KPrediction: coiled-coil, solvent, alignment
[ ]jp_WawvSvz.concise.pdf2015-04-17 17:12 1.0MPDF prediction and alignment data
[ ]jp_WawvSvz.concise.ps2015-04-17 17:12 18MPrediction: coiled-coil, solvent, alignment
[ ]jp_WawvSvz.fasta2015-04-17 17:02 162 Input query sequence in FASTA format
[ ]jp_WawvSvz.full_MSA.fasta2015-04-17 17:11 20MFull MSA before JPred filters in FASTA
[TXT]jp_WawvSvz.full_MSA.fasta.noGaps.html2015-04-17 17:13 2.7MFull MSA before JPred filters in FASTA
[TXT]jp_WawvSvz.full_MSA.fasta.withGaps.html2015-04-17 17:13 53MFull MSA before JPred filters in FASTA
[ ]jp_WawvSvz.hmm2015-04-17 17:12 28KHHMer2 profile of the alignment
[TXT]jp_WawvSvz.html2015-04-17 17:12 335KHTML prediction and alignment data
[ ]jp_WawvSvz.input2015-04-17 16:28 154 Raw input data for analysis
[ ]jp_WawvSvz.jalview2015-04-17 17:12 3.8KJalview annotation file for alignment
[ ]jp_WawvSvz.jnet2015-04-17 17:12 5.4KJnet secondary structure output
[TXT]jp_WawvSvz.profile2015-04-17 17:07 24KPSIBLAST profile from alignment
[ ]jp_WawvSvz.pssm2015-04-17 17:12 32KPSIBLAST PSSM for Jnet
[TXT]jp_WawvSvz.results.html2016-02-15 12:21 68KJPred results page
[TXT]jp_WawvSvz.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_WawvSvz.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_WawvSvz.seq2015-04-17 16:28 162 Sequence data file
[TXT]jp_WawvSvz.simple.html2015-04-17 17:12 1.4KBrief HTML: sequence and prediction only
[TXT]jp_WawvSvz.svg.html2015-04-17 17:13 60KJalview SVG summary of results
[ ]jp_WawvSvz.tar.gz2015-04-17 17:13 17MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.