JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 21:43 4.7KJPred server log file
[TXT]README2016-02-15 12:21 2.1KResults file descriptions
[TXT]d4acfa1.name2015-04-17 18:56 0 Job name flag file
[ ]jp_d6nCJvd.align2015-04-17 21:42 99KPSIBLAST alignment in FASTA format
[TXT]jp_d6nCJvd.als2015-04-17 21:42 2.2KAlscript command file for PS/PDF output
[ ]jp_d6nCJvd.blast.gz2015-04-17 21:41 1.4MCompressed PSIBLAST output file
[TXT]jp_d6nCJvd.coils.csv2015-04-17 21:42 636 COILS output in CSV format
[ ]jp_d6nCJvd.coilseq.lupas_142015-04-17 21:42 4.2KCOILS output, window length 14
[ ]jp_d6nCJvd.coilseq.lupas_212015-04-17 21:42 4.2KCOILS output, window length 21
[ ]jp_d6nCJvd.coilseq.lupas_282015-04-17 21:42 4.2KCOILS output, window length 28
[ ]jp_d6nCJvd.concise2015-04-17 21:42 191KPrediction: coiled-coil, solvent, alignment
[ ]jp_d6nCJvd.concise.blc2015-04-17 21:42 99KBLC format prediction and alignment data
[ ]jp_d6nCJvd.concise.fasta2015-04-17 21:42 100KPrediction: coiled-coil, solvent, alignment
[ ]jp_d6nCJvd.concise.pdf2015-04-17 21:43 643KPDF prediction and alignment data
[ ]jp_d6nCJvd.concise.ps2015-04-17 21:42 11MPrediction: coiled-coil, solvent, alignment
[ ]jp_d6nCJvd.fasta2015-04-17 21:03 115 Input query sequence in FASTA format
[ ]jp_d6nCJvd.full_MSA.fasta2015-04-17 21:42 3.4MFull MSA before JPred filters in FASTA
[TXT]jp_d6nCJvd.full_MSA.fasta.noGaps.html2015-04-17 21:43 887KFull MSA before JPred filters in FASTA
[TXT]jp_d6nCJvd.full_MSA.fasta.withGaps.html2015-04-17 21:43 11MFull MSA before JPred filters in FASTA
[ ]jp_d6nCJvd.hmm2015-04-17 21:42 19KHHMer2 profile of the alignment
[TXT]jp_d6nCJvd.html2015-04-17 21:42 269KHTML prediction and alignment data
[ ]jp_d6nCJvd.input2015-04-17 18:56 108 Raw input data for analysis
[ ]jp_d6nCJvd.jalview2015-04-17 21:42 2.8KJalview annotation file for alignment
[ ]jp_d6nCJvd.jnet2015-04-17 21:42 3.8KJnet secondary structure output
[TXT]jp_d6nCJvd.profile2015-04-17 21:30 16KPSIBLAST profile from alignment
[ ]jp_d6nCJvd.pssm2015-04-17 21:42 22KPSIBLAST PSSM for Jnet
[TXT]jp_d6nCJvd.results.html2016-02-15 12:21 50KJPred results page
[TXT]jp_d6nCJvd.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_d6nCJvd.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_d6nCJvd.seq2015-04-17 18:56 115 Sequence data file
[TXT]jp_d6nCJvd.simple.html2015-04-17 21:42 1.2KBrief HTML: sequence and prediction only
[TXT]jp_d6nCJvd.svg.html2015-04-17 21:43 42KJalview SVG summary of results
[ ]jp_d6nCJvd.tar.gz2015-04-17 21:43 3.2MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.