JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 19:12 4.7KJPred server log file
[TXT]README2016-02-15 12:21 2.1KResults file descriptions
[TXT]d4affa_.name2015-04-17 17:43 0 Job name flag file
[ ]jp_s9Z0MbX.align2015-04-17 19:12 86KPSIBLAST alignment in FASTA format
[TXT]jp_s9Z0MbX.als2015-04-17 19:12 2.4KAlscript command file for PS/PDF output
[ ]jp_s9Z0MbX.blast.gz2015-04-17 19:11 1.3MCompressed PSIBLAST output file
[TXT]jp_s9Z0MbX.coils.csv2015-04-17 19:12 690 COILS output in CSV format
[ ]jp_s9Z0MbX.coilseq.lupas_142015-04-17 19:12 4.6KCOILS output, window length 14
[ ]jp_s9Z0MbX.coilseq.lupas_212015-04-17 19:12 4.6KCOILS output, window length 21
[ ]jp_s9Z0MbX.coilseq.lupas_282015-04-17 19:12 4.6KCOILS output, window length 28
[ ]jp_s9Z0MbX.concise2015-04-17 19:12 169KPrediction: coiled-coil, solvent, alignment
[ ]jp_s9Z0MbX.concise.blc2015-04-17 19:12 87KBLC format prediction and alignment data
[ ]jp_s9Z0MbX.concise.fasta2015-04-17 19:12 88KPrediction: coiled-coil, solvent, alignment
[ ]jp_s9Z0MbX.concise.pdf2015-04-17 19:12 567KPDF prediction and alignment data
[ ]jp_s9Z0MbX.concise.ps2015-04-17 19:12 10MPrediction: coiled-coil, solvent, alignment
[ ]jp_s9Z0MbX.fasta2015-04-17 19:05 124 Input query sequence in FASTA format
[ ]jp_s9Z0MbX.full_MSA.fasta2015-04-17 19:12 2.3MFull MSA before JPred filters in FASTA
[TXT]jp_s9Z0MbX.full_MSA.fasta.noGaps.html2015-04-17 19:12 753KFull MSA before JPred filters in FASTA
[TXT]jp_s9Z0MbX.full_MSA.fasta.withGaps.html2015-04-17 19:12 7.3MFull MSA before JPred filters in FASTA
[ ]jp_s9Z0MbX.hmm2015-04-17 19:12 21KHHMer2 profile of the alignment
[TXT]jp_s9Z0MbX.html2015-04-17 19:12 228KHTML prediction and alignment data
[ ]jp_s9Z0MbX.input2015-04-17 17:43 117 Raw input data for analysis
[ ]jp_s9Z0MbX.jalview2015-04-17 19:12 3.0KJalview annotation file for alignment
[ ]jp_s9Z0MbX.jnet2015-04-17 19:12 4.1KJnet secondary structure output
[TXT]jp_s9Z0MbX.profile2015-04-17 19:11 18KPSIBLAST profile from alignment
[ ]jp_s9Z0MbX.pssm2015-04-17 19:12 24KPSIBLAST PSSM for Jnet
[TXT]jp_s9Z0MbX.results.html2016-02-15 12:21 54KJPred results page
[TXT]jp_s9Z0MbX.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_s9Z0MbX.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_s9Z0MbX.seq2015-04-17 17:43 124 Sequence data file
[TXT]jp_s9Z0MbX.simple.html2015-04-17 19:12 1.3KBrief HTML: sequence and prediction only
[TXT]jp_s9Z0MbX.svg.html2015-04-17 19:12 46KJalview SVG summary of results
[ ]jp_s9Z0MbX.tar.gz2015-04-17 19:12 2.7MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.