JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 22:20 4.7KJPred server log file
[TXT]README2016-02-15 12:21 2.1KResults file descriptions
[TXT]d4drib_.name2015-04-17 19:33 0 Job name flag file
[ ]jp_vmETF_o.align2015-04-17 22:19 19KPSIBLAST alignment in FASTA format
[TXT]jp_vmETF_o.als2015-04-17 22:19 1.8KAlscript command file for PS/PDF output
[ ]jp_vmETF_o.blast.gz2015-04-17 22:19 142KCompressed PSIBLAST output file
[TXT]jp_vmETF_o.coils.csv2015-04-17 22:19 606 COILS output in CSV format
[ ]jp_vmETF_o.coilseq.lupas_142015-04-17 22:19 4.0KCOILS output, window length 14
[ ]jp_vmETF_o.coilseq.lupas_212015-04-17 22:19 4.0KCOILS output, window length 21
[ ]jp_vmETF_o.coilseq.lupas_282015-04-17 22:19 4.0KCOILS output, window length 28
[ ]jp_vmETF_o.concise2015-04-17 22:19 40KPrediction: coiled-coil, solvent, alignment
[ ]jp_vmETF_o.concise.blc2015-04-17 22:19 20KBLC format prediction and alignment data
[ ]jp_vmETF_o.concise.fasta2015-04-17 22:19 20KPrediction: coiled-coil, solvent, alignment
[ ]jp_vmETF_o.concise.pdf2015-04-17 22:19 126KPDF prediction and alignment data
[ ]jp_vmETF_o.concise.ps2015-04-17 22:19 2.3MPrediction: coiled-coil, solvent, alignment
[ ]jp_vmETF_o.fasta2015-04-17 22:16 110 Input query sequence in FASTA format
[ ]jp_vmETF_o.full_MSA.fasta2015-04-17 22:19 158KFull MSA before JPred filters in FASTA
[TXT]jp_vmETF_o.full_MSA.fasta.noGaps.html2015-04-17 22:19 101KFull MSA before JPred filters in FASTA
[TXT]jp_vmETF_o.full_MSA.fasta.withGaps.html2015-04-17 22:19 491KFull MSA before JPred filters in FASTA
[ ]jp_vmETF_o.hmm2015-04-17 22:19 18KHHMer2 profile of the alignment
[TXT]jp_vmETF_o.html2015-04-17 22:19 65KHTML prediction and alignment data
[ ]jp_vmETF_o.input2015-04-17 19:33 103 Raw input data for analysis
[ ]jp_vmETF_o.jalview2015-04-17 22:19 2.8KJalview annotation file for alignment
[ ]jp_vmETF_o.jnet2015-04-17 22:19 3.6KJnet secondary structure output
[TXT]jp_vmETF_o.profile2015-04-17 22:18 16KPSIBLAST profile from alignment
[ ]jp_vmETF_o.pssm2015-04-17 22:19 21KPSIBLAST PSSM for Jnet
[TXT]jp_vmETF_o.results.html2016-02-15 12:21 48KJPred results page
[TXT]jp_vmETF_o.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_vmETF_o.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_vmETF_o.seq2015-04-17 19:33 110 Sequence data file
[TXT]jp_vmETF_o.simple.html2015-04-17 22:19 1.2KBrief HTML: sequence and prediction only
[TXT]jp_vmETF_o.svg.html2015-04-17 22:19 40KJalview SVG summary of results
[ ]jp_vmETF_o.tar.gz2015-04-17 22:20 371KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.