JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 16:13 4.7KJPred server log file
[TXT]README2016-02-15 12:21 2.1KResults file descriptions
[TXT]d4f01a1.name2015-04-17 15:52 0 Job name flag file
[ ]jp_zMJ1aAL.align2015-04-17 16:13 53KPSIBLAST alignment in FASTA format
[TXT]jp_zMJ1aAL.als2015-04-17 16:13 2.7KAlscript command file for PS/PDF output
[ ]jp_zMJ1aAL.blast.gz2015-04-17 16:13 2.8MCompressed PSIBLAST output file
[TXT]jp_zMJ1aAL.coils.csv2015-04-17 16:13 762 COILS output in CSV format
[ ]jp_zMJ1aAL.coilseq.lupas_142015-04-17 16:13 5.1KCOILS output, window length 14
[ ]jp_zMJ1aAL.coilseq.lupas_212015-04-17 16:13 5.1KCOILS output, window length 21
[ ]jp_zMJ1aAL.coilseq.lupas_282015-04-17 16:13 5.1KCOILS output, window length 28
[ ]jp_zMJ1aAL.concise2015-04-17 16:13 106KPrediction: coiled-coil, solvent, alignment
[ ]jp_zMJ1aAL.concise.blc2015-04-17 16:13 54KBLC format prediction and alignment data
[ ]jp_zMJ1aAL.concise.fasta2015-04-17 16:13 54KPrediction: coiled-coil, solvent, alignment
[ ]jp_zMJ1aAL.concise.pdf2015-04-17 16:13 357KPDF prediction and alignment data
[ ]jp_zMJ1aAL.concise.ps2015-04-17 16:13 6.3MPrediction: coiled-coil, solvent, alignment
[ ]jp_zMJ1aAL.fasta2015-04-17 16:09 136 Input query sequence in FASTA format
[ ]jp_zMJ1aAL.full_MSA.fasta2015-04-17 16:13 4.6MFull MSA before JPred filters in FASTA
[TXT]jp_zMJ1aAL.full_MSA.fasta.noGaps.html2015-04-17 16:13 1.6MFull MSA before JPred filters in FASTA
[TXT]jp_zMJ1aAL.full_MSA.fasta.withGaps.html2015-04-17 16:13 20MFull MSA before JPred filters in FASTA
[ ]jp_zMJ1aAL.hmm2015-04-17 16:13 23KHHMer2 profile of the alignment
[TXT]jp_zMJ1aAL.html2015-04-17 16:13 138KHTML prediction and alignment data
[ ]jp_zMJ1aAL.input2015-04-17 15:52 129 Raw input data for analysis
[ ]jp_zMJ1aAL.jalview2015-04-17 16:13 3.3KJalview annotation file for alignment
[ ]jp_zMJ1aAL.jnet2015-04-17 16:13 4.5KJnet secondary structure output
[TXT]jp_zMJ1aAL.profile2015-04-17 16:12 20KPSIBLAST profile from alignment
[ ]jp_zMJ1aAL.pssm2015-04-17 16:13 26KPSIBLAST PSSM for Jnet
[TXT]jp_zMJ1aAL.results.html2016-02-15 12:21 59KJPred results page
[TXT]jp_zMJ1aAL.results_jalview.html2016-02-24 17:19 13KJalview results options
[TXT]jp_zMJ1aAL.results_jalview_app.html2016-02-24 17:19 16KHTML prediction and alignment data
[ ]jp_zMJ1aAL.seq2015-04-17 15:52 136 Sequence data file
[TXT]jp_zMJ1aAL.simple.html2015-04-17 16:13 1.4KBrief HTML: sequence and prediction only
[TXT]jp_zMJ1aAL.svg.html2015-04-17 16:13 51KJalview SVG summary of results
[ ]jp_zMJ1aAL.tar.gz2015-04-17 16:13 4.6MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.