JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 21:30 4.7KJPred server log file
[TXT]README2016-02-15 12:21 2.1KResults file descriptions
[TXT]d4g1qa1.name2015-04-17 18:57 0 Job name flag file
[ ]jp_MwwaswW.align2015-04-17 21:29 166KPSIBLAST alignment in FASTA format
[TXT]jp_MwwaswW.als2015-04-17 21:29 7.1KAlscript command file for PS/PDF output
[ ]jp_MwwaswW.blast.gz2015-04-17 21:24 17MCompressed PSIBLAST output file
[TXT]jp_MwwaswW.coils.csv2015-04-17 21:29 3.3KCOILS output in CSV format
[ ]jp_MwwaswW.coilseq.lupas_142015-04-17 21:29 23KCOILS output, window length 14
[ ]jp_MwwaswW.coilseq.lupas_212015-04-17 21:29 23KCOILS output, window length 21
[ ]jp_MwwaswW.coilseq.lupas_282015-04-17 21:29 23KCOILS output, window length 28
[ ]jp_MwwaswW.concise2015-04-17 21:29 347KPrediction: coiled-coil, solvent, alignment
[ ]jp_MwwaswW.concise.blc2015-04-17 21:29 171KBLC format prediction and alignment data
[ ]jp_MwwaswW.concise.fasta2015-04-17 21:29 171KPrediction: coiled-coil, solvent, alignment
[ ]jp_MwwaswW.concise.pdf2015-04-17 21:29 1.1MPDF prediction and alignment data
[ ]jp_MwwaswW.concise.ps2015-04-17 21:29 21MPrediction: coiled-coil, solvent, alignment
[ ]jp_MwwaswW.fasta2015-04-17 21:06 576 Input query sequence in FASTA format
[ ]jp_MwwaswW.full_MSA.fasta2015-04-17 21:28 38MFull MSA before JPred filters in FASTA
[TXT]jp_MwwaswW.full_MSA.fasta.noGaps.html2015-04-17 21:30 6.6MFull MSA before JPred filters in FASTA
[TXT]jp_MwwaswW.full_MSA.fasta.withGaps.html2015-04-17 21:30 130MFull MSA before JPred filters in FASTA
[ ]jp_MwwaswW.hmm2015-04-17 21:29 104KHHMer2 profile of the alignment
[TXT]jp_MwwaswW.html2015-04-17 21:29 267KHTML prediction and alignment data
[ ]jp_MwwaswW.input2015-04-17 18:57 563 Raw input data for analysis
[ ]jp_MwwaswW.jalview2015-04-17 21:29 12KJalview annotation file for alignment
[ ]jp_MwwaswW.jnet2015-04-17 21:29 20KJnet secondary structure output
[TXT]jp_MwwaswW.profile2015-04-17 21:22 88KPSIBLAST profile from alignment
[ ]jp_MwwaswW.pssm2015-04-17 21:29 119KPSIBLAST PSSM for Jnet
[TXT]jp_MwwaswW.results.html2016-02-15 12:21 230KJPred results page
[TXT]jp_MwwaswW.results_jalview.html2016-02-24 17:19 13KJalview results options
[TXT]jp_MwwaswW.results_jalview_app.html2016-02-24 17:19 16KHTML prediction and alignment data
[ ]jp_MwwaswW.seq2015-04-17 18:57 576 Sequence data file
[TXT]jp_MwwaswW.simple.html2015-04-17 21:29 2.9KBrief HTML: sequence and prediction only
[TXT]jp_MwwaswW.svg.html2015-04-17 21:30 222KJalview SVG summary of results
[ ]jp_MwwaswW.tar.gz2015-04-17 21:30 29MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.