JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 16:36 4.7KJPred server log file
[TXT]README2016-02-15 12:21 2.1KResults file descriptions
[TXT]d4gmua1.name2015-04-17 15:53 0 Job name flag file
[ ]jp_ML1Yr0O.align2015-04-17 16:36 116KPSIBLAST alignment in FASTA format
[TXT]jp_ML1Yr0O.als2015-04-17 16:36 3.9KAlscript command file for PS/PDF output
[ ]jp_ML1Yr0O.blast.gz2015-04-17 16:36 664KCompressed PSIBLAST output file
[TXT]jp_ML1Yr0O.coils.csv2015-04-17 16:36 1.5KCOILS output in CSV format
[ ]jp_ML1Yr0O.coilseq.lupas_142015-04-17 16:36 11KCOILS output, window length 14
[ ]jp_ML1Yr0O.coilseq.lupas_212015-04-17 16:36 11KCOILS output, window length 21
[ ]jp_ML1Yr0O.coilseq.lupas_282015-04-17 16:36 11KCOILS output, window length 28
[ ]jp_ML1Yr0O.concise2015-04-17 16:36 236KPrediction: coiled-coil, solvent, alignment
[ ]jp_ML1Yr0O.concise.blc2015-04-17 16:36 119KBLC format prediction and alignment data
[ ]jp_ML1Yr0O.concise.fasta2015-04-17 16:36 119KPrediction: coiled-coil, solvent, alignment
[ ]jp_ML1Yr0O.concise.pdf2015-04-17 16:36 768KPDF prediction and alignment data
[ ]jp_ML1Yr0O.concise.ps2015-04-17 16:36 14MPrediction: coiled-coil, solvent, alignment
[ ]jp_ML1Yr0O.fasta2015-04-17 16:10 273 Input query sequence in FASTA format
[ ]jp_ML1Yr0O.full_MSA.fasta2015-04-17 16:36 917KFull MSA before JPred filters in FASTA
[TXT]jp_ML1Yr0O.full_MSA.fasta.noGaps.html2015-04-17 16:36 394KFull MSA before JPred filters in FASTA
[TXT]jp_ML1Yr0O.full_MSA.fasta.withGaps.html2015-04-17 16:36 3.4MFull MSA before JPred filters in FASTA
[ ]jp_ML1Yr0O.hmm2015-04-17 16:36 48KHHMer2 profile of the alignment
[TXT]jp_ML1Yr0O.html2015-04-17 16:36 222KHTML prediction and alignment data
[ ]jp_ML1Yr0O.input2015-04-17 15:53 264 Raw input data for analysis
[ ]jp_ML1Yr0O.jalview2015-04-17 16:36 6.0KJalview annotation file for alignment
[ ]jp_ML1Yr0O.jnet2015-04-17 16:36 9.4KJnet secondary structure output
[TXT]jp_ML1Yr0O.profile2015-04-17 16:29 41KPSIBLAST profile from alignment
[ ]jp_ML1Yr0O.pssm2015-04-17 16:36 55KPSIBLAST PSSM for Jnet
[TXT]jp_ML1Yr0O.results.html2016-02-15 12:21 111KJPred results page
[TXT]jp_ML1Yr0O.results_jalview.html2016-02-24 17:19 13KJalview results options
[TXT]jp_ML1Yr0O.results_jalview_app.html2016-02-24 17:19 16KHTML prediction and alignment data
[ ]jp_ML1Yr0O.seq2015-04-17 15:53 273 Sequence data file
[TXT]jp_ML1Yr0O.simple.html2015-04-17 16:36 1.8KBrief HTML: sequence and prediction only
[TXT]jp_ML1Yr0O.svg.html2015-04-17 16:36 103KJalview SVG summary of results
[ ]jp_ML1Yr0O.tar.gz2015-04-17 16:36 1.9MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.