JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 16:15 4.7KJPred server log file
[TXT]README2016-02-15 12:21 2.1KResults file descriptions
[TXT]d4gv2a1.name2015-04-17 15:53 0 Job name flag file
[ ]jp_CZn7DpN.align2015-04-17 16:15 75KPSIBLAST alignment in FASTA format
[TXT]jp_CZn7DpN.als2015-04-17 16:15 2.2KAlscript command file for PS/PDF output
[ ]jp_CZn7DpN.blast.gz2015-04-17 16:15 619KCompressed PSIBLAST output file
[TXT]jp_CZn7DpN.coils.csv2015-04-17 16:15 888 COILS output in CSV format
[ ]jp_CZn7DpN.coilseq.lupas_142015-04-17 16:15 6.0KCOILS output, window length 14
[ ]jp_CZn7DpN.coilseq.lupas_212015-04-17 16:15 6.0KCOILS output, window length 21
[ ]jp_CZn7DpN.coilseq.lupas_282015-04-17 16:15 6.0KCOILS output, window length 28
[ ]jp_CZn7DpN.concise2015-04-17 16:15 149KPrediction: coiled-coil, solvent, alignment
[ ]jp_CZn7DpN.concise.blc2015-04-17 16:15 76KBLC format prediction and alignment data
[ ]jp_CZn7DpN.concise.fasta2015-04-17 16:15 76KPrediction: coiled-coil, solvent, alignment
[ ]jp_CZn7DpN.concise.pdf2015-04-17 16:15 508KPDF prediction and alignment data
[ ]jp_CZn7DpN.concise.ps2015-04-17 16:15 9.0MPrediction: coiled-coil, solvent, alignment
[ ]jp_CZn7DpN.fasta2015-04-17 16:10 157 Input query sequence in FASTA format
[ ]jp_CZn7DpN.full_MSA.fasta2015-04-17 16:15 1.0MFull MSA before JPred filters in FASTA
[TXT]jp_CZn7DpN.full_MSA.fasta.noGaps.html2015-04-17 16:15 231KFull MSA before JPred filters in FASTA
[TXT]jp_CZn7DpN.full_MSA.fasta.withGaps.html2015-04-17 16:15 3.2MFull MSA before JPred filters in FASTA
[ ]jp_CZn7DpN.hmm2015-04-17 16:15 27KHHMer2 profile of the alignment
[TXT]jp_CZn7DpN.html2015-04-17 16:15 180KHTML prediction and alignment data
[ ]jp_CZn7DpN.input2015-04-17 15:53 150 Raw input data for analysis
[ ]jp_CZn7DpN.jalview2015-04-17 16:15 3.7KJalview annotation file for alignment
[ ]jp_CZn7DpN.jnet2015-04-17 16:15 5.3KJnet secondary structure output
[TXT]jp_CZn7DpN.profile2015-04-17 16:13 23KPSIBLAST profile from alignment
[ ]jp_CZn7DpN.pssm2015-04-17 16:15 31KPSIBLAST PSSM for Jnet
[TXT]jp_CZn7DpN.results.html2016-02-15 12:21 66KJPred results page
[TXT]jp_CZn7DpN.results_jalview.html2016-02-24 17:19 13KJalview results options
[TXT]jp_CZn7DpN.results_jalview_app.html2016-02-24 17:19 16KHTML prediction and alignment data
[ ]jp_CZn7DpN.seq2015-04-17 15:53 157 Sequence data file
[TXT]jp_CZn7DpN.simple.html2015-04-17 16:15 1.3KBrief HTML: sequence and prediction only
[TXT]jp_CZn7DpN.svg.html2015-04-17 16:15 58KJalview SVG summary of results
[ ]jp_CZn7DpN.tar.gz2015-04-17 16:15 1.5MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.