JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 17:14 4.7KJPred server log file
[TXT]README2016-02-15 12:21 2.1KResults file descriptions
[TXT]d4hwsa2.name2015-04-17 16:30 0 Job name flag file
[ ]jp_fkl6g3u.align2015-04-17 17:13 120KPSIBLAST alignment in FASTA format
[TXT]jp_fkl6g3u.als2015-04-17 17:13 2.4KAlscript command file for PS/PDF output
[ ]jp_fkl6g3u.blast.gz2015-04-17 17:12 6.2MCompressed PSIBLAST output file
[TXT]jp_fkl6g3u.coils.csv2015-04-17 17:13 738 COILS output in CSV format
[ ]jp_fkl6g3u.coilseq.lupas_142015-04-17 17:13 5.0KCOILS output, window length 14
[ ]jp_fkl6g3u.coilseq.lupas_212015-04-17 17:13 5.0KCOILS output, window length 21
[ ]jp_fkl6g3u.coilseq.lupas_282015-04-17 17:13 5.0KCOILS output, window length 28
[ ]jp_fkl6g3u.concise2015-04-17 17:13 234KPrediction: coiled-coil, solvent, alignment
[ ]jp_fkl6g3u.concise.blc2015-04-17 17:13 120KBLC format prediction and alignment data
[ ]jp_fkl6g3u.concise.fasta2015-04-17 17:13 122KPrediction: coiled-coil, solvent, alignment
[ ]jp_fkl6g3u.concise.pdf2015-04-17 17:14 784KPDF prediction and alignment data
[ ]jp_fkl6g3u.concise.ps2015-04-17 17:13 14MPrediction: coiled-coil, solvent, alignment
[ ]jp_fkl6g3u.fasta2015-04-17 17:07 132 Input query sequence in FASTA format
[ ]jp_fkl6g3u.full_MSA.fasta2015-04-17 17:13 11MFull MSA before JPred filters in FASTA
[TXT]jp_fkl6g3u.full_MSA.fasta.noGaps.html2015-04-17 17:14 2.4MFull MSA before JPred filters in FASTA
[TXT]jp_fkl6g3u.full_MSA.fasta.withGaps.html2015-04-17 17:14 37MFull MSA before JPred filters in FASTA
[ ]jp_fkl6g3u.hmm2015-04-17 17:13 22KHHMer2 profile of the alignment
[TXT]jp_fkl6g3u.html2015-04-17 17:13 305KHTML prediction and alignment data
[ ]jp_fkl6g3u.input2015-04-17 16:30 125 Raw input data for analysis
[ ]jp_fkl6g3u.jalview2015-04-17 17:13 3.2KJalview annotation file for alignment
[ ]jp_fkl6g3u.jnet2015-04-17 17:13 4.4KJnet secondary structure output
[TXT]jp_fkl6g3u.profile2015-04-17 17:11 19KPSIBLAST profile from alignment
[ ]jp_fkl6g3u.pssm2015-04-17 17:13 25KPSIBLAST PSSM for Jnet
[TXT]jp_fkl6g3u.results.html2016-02-15 12:21 57KJPred results page
[TXT]jp_fkl6g3u.results_jalview.html2016-02-24 17:19 13KJalview results options
[TXT]jp_fkl6g3u.results_jalview_app.html2016-02-24 17:19 16KHTML prediction and alignment data
[ ]jp_fkl6g3u.seq2015-04-17 16:30 132 Sequence data file
[TXT]jp_fkl6g3u.simple.html2015-04-17 17:13 1.3KBrief HTML: sequence and prediction only
[TXT]jp_fkl6g3u.svg.html2015-04-17 17:14 49KJalview SVG summary of results
[ ]jp_fkl6g3u.tar.gz2015-04-17 17:14 11MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.