JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 21:14 4.7KJPred server log file
[TXT]README2016-02-15 12:21 2.1KResults file descriptions
[TXT]d4lwra_.name2015-04-17 18:58 0 Job name flag file
[ ]jp_DNU4ele.align2015-04-17 21:14 213KPSIBLAST alignment in FASTA format
[TXT]jp_DNU4ele.als2015-04-17 21:14 3.1KAlscript command file for PS/PDF output
[ ]jp_DNU4ele.blast.gz2015-04-17 21:13 4.0MCompressed PSIBLAST output file
[TXT]jp_DNU4ele.coils.csv2015-04-17 21:14 1.2KCOILS output in CSV format
[ ]jp_DNU4ele.coilseq.lupas_142015-04-17 21:14 8.2KCOILS output, window length 14
[ ]jp_DNU4ele.coilseq.lupas_212015-04-17 21:14 8.2KCOILS output, window length 21
[ ]jp_DNU4ele.coilseq.lupas_282015-04-17 21:14 8.2KCOILS output, window length 28
[ ]jp_DNU4ele.concise2015-04-17 21:14 418KPrediction: coiled-coil, solvent, alignment
[ ]jp_DNU4ele.concise.blc2015-04-17 21:14 213KBLC format prediction and alignment data
[ ]jp_DNU4ele.concise.fasta2015-04-17 21:14 215KPrediction: coiled-coil, solvent, alignment
[ ]jp_DNU4ele.concise.pdf2015-04-17 21:14 1.4MPDF prediction and alignment data
[ ]jp_DNU4ele.concise.ps2015-04-17 21:14 26MPrediction: coiled-coil, solvent, alignment
[ ]jp_DNU4ele.fasta2015-04-17 21:07 211 Input query sequence in FASTA format
[ ]jp_DNU4ele.full_MSA.fasta2015-04-17 21:13 7.0MFull MSA before JPred filters in FASTA
[TXT]jp_DNU4ele.full_MSA.fasta.noGaps.html2015-04-17 21:14 1.2MFull MSA before JPred filters in FASTA
[TXT]jp_DNU4ele.full_MSA.fasta.withGaps.html2015-04-17 21:14 22MFull MSA before JPred filters in FASTA
[ ]jp_DNU4ele.hmm2015-04-17 21:14 37KHHMer2 profile of the alignment
[TXT]jp_DNU4ele.html2015-04-17 21:14 423KHTML prediction and alignment data
[ ]jp_DNU4ele.input2015-04-17 18:58 203 Raw input data for analysis
[ ]jp_DNU4ele.jalview2015-04-17 21:14 4.7KJalview annotation file for alignment
[ ]jp_DNU4ele.jnet2015-04-17 21:14 7.2KJnet secondary structure output
[TXT]jp_DNU4ele.profile2015-04-17 21:12 32KPSIBLAST profile from alignment
[ ]jp_DNU4ele.pssm2015-04-17 21:14 42KPSIBLAST PSSM for Jnet
[TXT]jp_DNU4ele.results.html2016-02-15 12:21 87KJPred results page
[TXT]jp_DNU4ele.results_jalview.html2016-02-24 17:19 13KJalview results options
[TXT]jp_DNU4ele.results_jalview_app.html2016-02-24 17:19 16KHTML prediction and alignment data
[ ]jp_DNU4ele.seq2015-04-17 18:58 211 Sequence data file
[TXT]jp_DNU4ele.simple.html2015-04-17 21:14 1.5KBrief HTML: sequence and prediction only
[TXT]jp_DNU4ele.svg.html2015-04-17 21:14 79KJalview SVG summary of results
[ ]jp_DNU4ele.tar.gz2015-04-17 21:14 8.1MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.