JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 22:33 4.7KJPred server log file
[TXT]README2016-02-15 12:21 2.1KResults file descriptions
[TXT]d4mf5a2.name2015-04-17 19:51 0 Job name flag file
[ ]jp_M6TwOsp.align2015-04-17 22:32 133KPSIBLAST alignment in FASTA format
[TXT]jp_M6TwOsp.als2015-04-17 22:33 2.2KAlscript command file for PS/PDF output
[ ]jp_M6TwOsp.blast.gz2015-04-17 22:31 6.2MCompressed PSIBLAST output file
[TXT]jp_M6TwOsp.coils.csv2015-04-17 22:33 816 COILS output in CSV format
[ ]jp_M6TwOsp.coilseq.lupas_142015-04-17 22:33 5.5KCOILS output, window length 14
[ ]jp_M6TwOsp.coilseq.lupas_212015-04-17 22:33 5.5KCOILS output, window length 21
[ ]jp_M6TwOsp.coilseq.lupas_282015-04-17 22:33 5.5KCOILS output, window length 28
[ ]jp_M6TwOsp.concise2015-04-17 22:33 260KPrediction: coiled-coil, solvent, alignment
[ ]jp_M6TwOsp.concise.blc2015-04-17 22:33 133KBLC format prediction and alignment data
[ ]jp_M6TwOsp.concise.fasta2015-04-17 22:33 134KPrediction: coiled-coil, solvent, alignment
[ ]jp_M6TwOsp.concise.pdf2015-04-17 22:33 919KPDF prediction and alignment data
[ ]jp_M6TwOsp.concise.ps2015-04-17 22:33 16MPrediction: coiled-coil, solvent, alignment
[ ]jp_M6TwOsp.fasta2015-04-17 22:23 145 Input query sequence in FASTA format
[ ]jp_M6TwOsp.full_MSA.fasta2015-04-17 22:32 13MFull MSA before JPred filters in FASTA
[TXT]jp_M6TwOsp.full_MSA.fasta.noGaps.html2015-04-17 22:33 2.5MFull MSA before JPred filters in FASTA
[TXT]jp_M6TwOsp.full_MSA.fasta.withGaps.html2015-04-17 22:33 42MFull MSA before JPred filters in FASTA
[ ]jp_M6TwOsp.hmm2015-04-17 22:33 25KHHMer2 profile of the alignment
[TXT]jp_M6TwOsp.html2015-04-17 22:33 321KHTML prediction and alignment data
[ ]jp_M6TwOsp.input2015-04-17 19:51 138 Raw input data for analysis
[ ]jp_M6TwOsp.jalview2015-04-17 22:33 3.5KJalview annotation file for alignment
[ ]jp_M6TwOsp.jnet2015-04-17 22:33 4.8KJnet secondary structure output
[TXT]jp_M6TwOsp.profile2015-04-17 22:30 21KPSIBLAST profile from alignment
[ ]jp_M6TwOsp.pssm2015-04-17 22:32 28KPSIBLAST PSSM for Jnet
[TXT]jp_M6TwOsp.results.html2016-02-15 12:21 62KJPred results page
[TXT]jp_M6TwOsp.results_jalview.html2016-02-24 17:19 13KJalview results options
[TXT]jp_M6TwOsp.results_jalview_app.html2016-02-24 17:19 16KHTML prediction and alignment data
[ ]jp_M6TwOsp.seq2015-04-17 19:51 145 Sequence data file
[TXT]jp_M6TwOsp.simple.html2015-04-17 22:33 1.3KBrief HTML: sequence and prediction only
[TXT]jp_M6TwOsp.svg.html2015-04-17 22:33 54KJalview SVG summary of results
[ ]jp_M6TwOsp.tar.gz2015-04-17 22:33 12MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.