JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-21 10:47 4.7KJPred server log file
[TXT]README2016-02-15 12:21 2.1KResults file descriptions
[TXT]e1gk9_________1B.name2015-04-21 10:39 0 Job name flag file
[ ]jp_S5ZBcGI.align2015-04-21 10:46 503KPSIBLAST alignment in FASTA format
[TXT]jp_S5ZBcGI.als2015-04-21 10:46 6.1KAlscript command file for PS/PDF output
[ ]jp_S5ZBcGI.blast.gz2015-04-21 10:45 6.9MCompressed PSIBLAST output file
[TXT]jp_S5ZBcGI.coils.csv2015-04-21 10:46 3.3KCOILS output in CSV format
[ ]jp_S5ZBcGI.coilseq.lupas_142015-04-21 10:46 23KCOILS output, window length 14
[ ]jp_S5ZBcGI.coilseq.lupas_212015-04-21 10:46 23KCOILS output, window length 21
[ ]jp_S5ZBcGI.coilseq.lupas_282015-04-21 10:46 23KCOILS output, window length 28
[ ]jp_S5ZBcGI.concise2015-04-21 10:46 1.0MPrediction: coiled-coil, solvent, alignment
[ ]jp_S5ZBcGI.concise.blc2015-04-21 10:46 504KBLC format prediction and alignment data
[ ]jp_S5ZBcGI.concise.fasta2015-04-21 10:46 508KPrediction: coiled-coil, solvent, alignment
[ ]jp_S5ZBcGI.concise.pdf2015-04-21 10:47 3.6MPDF prediction and alignment data
[ ]jp_S5ZBcGI.concise.ps2015-04-21 10:46 64MPrediction: coiled-coil, solvent, alignment
[ ]jp_S5ZBcGI.fasta2015-04-21 10:39 577 Input query sequence in FASTA format
[ ]jp_S5ZBcGI.full_MSA.fasta2015-04-21 10:45 11MFull MSA before JPred filters in FASTA
[TXT]jp_S5ZBcGI.full_MSA.fasta.noGaps.html2015-04-21 10:47 1.4MFull MSA before JPred filters in FASTA
[TXT]jp_S5ZBcGI.full_MSA.fasta.withGaps.html2015-04-21 10:47 36MFull MSA before JPred filters in FASTA
[ ]jp_S5ZBcGI.hmm2015-04-21 10:46 104KHHMer2 profile of the alignment
[TXT]jp_S5ZBcGI.html2015-04-21 10:46 714KHTML prediction and alignment data
[ ]jp_S5ZBcGI.input2015-04-21 10:39 564 Raw input data for analysis
[ ]jp_S5ZBcGI.jalview2015-04-21 10:46 12KJalview annotation file for alignment
[ ]jp_S5ZBcGI.jnet2015-04-21 10:46 20KJnet secondary structure output
[TXT]jp_S5ZBcGI.profile2015-04-21 10:43 89KPSIBLAST profile from alignment
[ ]jp_S5ZBcGI.pssm2015-04-21 10:46 120KPSIBLAST PSSM for Jnet
[TXT]jp_S5ZBcGI.results.html2016-02-15 12:22 224KJPred results page
[TXT]jp_S5ZBcGI.results_jalview.html2016-02-24 17:19 13KJalview results options
[TXT]jp_S5ZBcGI.results_jalview_app.html2016-02-24 17:19 16KHTML prediction and alignment data
[ ]jp_S5ZBcGI.seq2015-04-21 10:39 577 Sequence data file
[TXT]jp_S5ZBcGI.simple.html2015-04-21 10:46 2.8KBrief HTML: sequence and prediction only
[TXT]jp_S5ZBcGI.svg.html2015-04-21 10:47 216KJalview SVG summary of results
[ ]jp_S5ZBcGI.tar.gz2015-04-21 10:47 15MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.