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Livingstone, C. D. and Barton, G. J. (1993),
"Protein Sequence Alignments: A Strategy
for the Hierarchical Analysis of Residue Conservation", Comp. Appl. Bio. Sci., 9, 745-756.
This paper describes the program AMAS. To obtain a copy of amas as an academic user, see here.
Russell, R. B. and Barton, G. J. (1993),
"An SH2-SH3 Domain hybrid", Nature,364, 765.
The STAMP software used to make this discovery is available - see here.
Russell, R. B. and Barton, G. J. (1993),
"The Limits of Protein Secondary Structure Prediction Accuracy from Multiple Sequence Alignment", J. Mol. Biol.,234, 951-957.
The ASSP software mentioned in this paper is available, see here.
Barton, G. J. (1993b),
"An Efficient Algorithm to Locate All Locally Optimal Alignments Between Two Sequences Allowing for Gaps", Comp. Appl. Bio. Sci.
,9, 729-734.
C code that implements this algorithm is available by email from Geoff. Barton.
PDF and gzip compressed PostScript versions of this paper are available here.
Boscott, P. E., Barton, G. J. and Richards, W. G. (1993),
"Secondary Structure Prediction for Modelling by Homology",
Prot. Eng.,6, 261-266.
This paper describes a method for combining secondary structure prediction techniques. The paper also compares the results of ab inito prediction, with prediction from alignment.
Barton, G. J. and Russell, R. B. (1993),
"Protein Structure Prediction", Nature, 361, 505-506.
A comment on the SH3 secondary structure prediction by S. Benner and colleagues
Barton, G. J. (1993a),
"ALSCRIPT - A Tool to Format Multiple Sequence Alignments",
Prot. Eng., 6, .37-40.
Alscript is available from here.
PDF and gzip compressed PostScript versions of this paper are available here.
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