|
|
Barton, G. J. (2007) "Sequence alignment for molecular replacement", Acta Crystallographica Section D: Biological Crystallography 64(1), 25-32.
|
|
Ghedin E, Wang SL, Spiro D, Caler E, Zhao Q, Crabtree J, Allen JE, Delcher AL, Guiliano DB, Miranda-Saavedra D, Angiuoli SV, Creasy T, Amedeo P, Haas B, El-Sayed NM, Wortman JR, Feldblyum T, Tallon L,
Schatz M, Shumway M, Koo H, Salzberg SL, Schobel S, Pertea M, Pop M, White O, Barton GJ, Carlow CKS, Crawford MJ, Daub J, Dimmic MW, Estes CF, Foster JM, Ganatra M, Gregory WF, Johnson NM, Jin JM,
Komuniecki R, Korf I, Kumar S, Laney S, Li BW, Li W, Lindblom TH, Lustigman S, Ma D, Maina CV, Martin DMA, McCarter JP, McReynolds L, Mitreva M, Nutman TB, Parkinson J, Peregrin-Alvarez JM, Poole C, Ren
QH, Saunders L, Sluder AE, Smith K, Stanke M, Unnasch TR, Ware J, Wei AD, Weil G, Williams DJ, Zhang YH, Fraser-Liggett C, Slatko B, Blaxter ML, Scott AL (2007) "Draft genome of the filarial
nematode parasite Brugia malayi"; Science 317 (5845): 1756-1760. [Abstract] [Full Text] [PDF]
|
|
Miranda-Saavedra, D., Stark, M. J., Packer, J. C., Vivares, C. P., Doerig, C and Barton, G. J. (2007)
"The complement of protein kinases of the microsporidium Encephalitozoon cuniculi in relation to
those of Saccharomyces cerevisiae and Schizosaccharomyces pombe.",
BMC Genomics, 8, 309. [Full Text][PDF]
Scott, M. S. and Barton, G. J. (2007)
"Probabilistic prediction and ranking of human protein-protein interactions", BMC Bioinformatics, 8, 239. [Full Text][PDF]
|
|
Seetharamappa J., Oke M., Liu H., McMahon S. A., Johnson K. A., Carter L., Dorward M., Zawadzki M., Overton I.M., van Niekirk C.A., Graham S., Botting C.H., Taylor G.L., White M.F., Barton G.J., Coote
P.J., Naismith J.H. (2007)
"Expression, purification, crystallization, data collection and preliminary biochemical characterization of methicillin-resistant Staphylococcus aureus Sar2028, an
aspartate/tyrosine/phenylalanine pyridoxal-5'-phosphate-dependent aminotransferase.",Acta Crystallogr
Sect F Struct Biol Cryst Commun. 63(Pt 5):452-6.
Seetharamappa J, Oke M, Liu H, McMahon SA, Johnson KA,
Carter L, Dorward M, Zawadzki M, Overton IM, van Niekirk CA, Graham S, Botting CH, Taylor GL, White MF, Barton GJ, Coote PJ, Naismith JH. (2007)
"Purification, crystallization and data collection of methicillin-resistant Staphylococcus aureus Sar2676, a pantothenate synthetase."
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2007 Jun 1;63
(Pt 6):488-91. Epub 2007 May 5.
Yard, B. A., Carter, L. G., Johnson, K. A., Overton, I. M., Dorward, M., Liu, H., McMahon, S. A., Oke, M., Puech, D.,
Barton, G. J., Naismith, J. H. and Campopiano, D. J. (2007)
" The structure of serine palmitoyltransferase; Gateway to sphingolipid biosynthesis", J. Mol. Biol. 370, 870-886. [Abstract]
The homology models built as part of this work may be downloaded here.
|
|
|
|
Miranda-Saavedra, D. and Barton, G. J., (2007),
"Classification and Functional Annotation of Eukaryotic Protein Kinases", PROTEINS: Structure, Function and Bioinformatics,
68, 893-914. [Preprint].
|
|
Jane M. Carlton, Robert P. Hirt, Joana C. Silva,
Arthur L. Delcher, Michael Schatz, Qi Zhao,
Jennifer R. Wortman, Shelby, L. Bidwell,
U. Cecilia M. Alsmark, Sébastien Besteiro,
Thomas Sicheritz-Ponten, Christophe J. Noel,
Joel B. Dacks, Peter G. Foster, Cedric Simillion,
Yves Van de Peer,
Diego Miranda-Saavedra, Geoffrey J. Barton,
Gareth D. Westrop, Sylke Müller, Daniele Dessi,
Pier Luigi Fiori, Qinghu Ren, Ian Paulsen,
Hanbang Zhang, Felix D. Bastida-Corcuera,
Augusto Simoes-Barbosa, Mark T. Brown,
Richard D. Hayes, Mandira Mukherjee,
Cheryl Y. Okumura, Rachel Schneider,
Alias J. Smith, Stepanka Vanacova, Maria Villalvazo,
Brian J. Haas, Mihaela Pertea, Tamara V. Feldblyum,
Terry R. Utterback, Chung-Li Shu, Kazutoyo Osoegawa,
Pieter J. de Jong, Ivan Hrdy, Lenka Horvathova,
Zuzana Zubacova, Pavel Dolezal, Shehre-Banoo Malik,
John M. Logsdon, Jr., Katrin Henze, Arti Gupta,
Ching C. Wang, Rebecca L. Dunne, Jacqueline A. Upcroft,
Peter Upcroft, Owen White, Steven L. Salzberg,
Petrus Tang, Cheng-Hsun Chiu, Ying-Shiung Lee,
T. Martin Embley, Graham H. Coombs, Jeremy C. Mottram,
Jan Tachezy, Claire M. Fraser-Liggett, Patricia J. Johnson
"Draft Genome Sequence of the Sexually Transmitted Pathogen Trichomonas vaginalis" (2007), Science, 315, 207-212,
DOI: 10.1126/science.1132894. [Full_Text][PDF].
|
|
Jefferson, E. R., Walsh, T., Roberts, T. and Barton, G. J. (2007)
"SNAPPI-DB: A Database and API of Structures, iNterfaces and Alignments for
Protein-Protein Interactions",
Nucleic Acids Research, 35, D580-D589, [Full Text][PDF].
|
|
|
|
