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Barton, G. J., (1991),
"Scanning Protein Sequence Databanks Using a Distributed Processing Workstation Network", Comp. Appl. Bio. Sci., 7,
85-88. [Medline][PDF]
C code discussed in this paper is available by email from Geoff. Barton.
Barton, G. J., Freemont, P. F., Newman, R. & Crumpton, M. (1991),
"Sequence Analysis of the Annexin Super Gene Family of Proteins" Eur. J. Biochem, 198, 749-760. (ICRF/OX) [Medline][PDF]
Barton, G. J. & Sternberg, M. J. E., (1990),
"Flexible Protein Sequence Patterns, A Sensitive Method to
Detect Weak Structural Similarities", J. Mol. Biol., 212, 389-402. (BBK/ICRF) [PDF]
The AMPS package for multiple alignment and flexible pattern matching is available from here.
Newman, R. H., Freemont, P. S., Barton, G. J. and Crumpton, M. J.,(1990),
"Interaction of Synthetic Peptides from Annexin I and
Uteroglobin with Lipid Monolayers and their Effect on Phospholipase A2 Activity", Biochem. Soc. Trans., 18, 1233-1234. (ICRF) [PDF]
Banga, J. P., Mahadevan, D., Barton, G. J., Sutton, B. J.,
Saldanha, J. W., Odell, E. and McGregor, A. M.(1990),
"Prediction of Domain Organisation and Secondary Structure of Thyroid Peroxidase, a Human Autoantigen Involved in Destructive Thyroiditis", FEBS. Lett., 266, 133-141. (ICRF) [PDF]
Clark, D. A., Barton, G. J. & Rawlings, C. J., (1990a),
"A Knowledge-Based Architecture for Protein Sequence Analysis and Structure Prediction", J. Mol. Graphics, 8,94-107. (ICRF) [PDF]
Clark, D. A., Archer, I., Barton, G. J. & Rawlings, C. J., (1990b),
"Knowledge-Based Orchestration of Protein Sequence Analysis and Knowledge Acquisition for Protein Structure Prediction", Proc. of AAAI, March 1990. (ICRF) [PDF]
Barton, G. J. & Sternberg, M. J. E., (1988),
"LOPAL and SCAMP: Techniques for the Comparison and Display of Protein Structures", J. Mol. Graphics.,
6, 190-196. (BBK) [PDF]
LOPAL described in this paper was the forerunner of STAMP. Get STAMP if you want to compare protein structures. If you are interested in the code for the graphics program SCAMP written
for the Evans and Sutherland PS330, contact Geoff. Barton If anyone has a PS330 emulator then I would be interested to hear from them as it might be fun to try and resurrect this old program.
Barton, G. J. & Sternberg, M. J. E., (1987a),
"Evaluation and Improvements in the Automatic Alignment of Protein Sequences", Prot. Eng., 1, 89-94. (BBK) [PDF]
The ideas in this paper are included in the AMPS package - see here.
Barton, G. J. & Sternberg, M. J. E., (1987b),
"A Strategy for the Rapid Multiple Alignment of Protein Sequences: Confidence Levels from Tertiary Structure Comparisons", J. Mol. Biol.,198, 327-337. (BBK) [PDF]
AMPS is available from here.
Zvelebil, M. J. J., Barton, G. J., Taylor, W. R. & Sternberg, M. J. E., (1987),
"Prediction of Protein Secondary Structure and Active Sites Using the Alignment of Homologous Sequences", J. Mol. Biol.,195, 957-961.(BBK) [PDF]
Coates, A. R. M., Cookson, J., Barton, G. J., Zvelebil, M. J. J., &
Sternberg, M. J. E., (1987),
"AIDS Vaccine Predictions", Nature, 326, 549-550. (BBK)
[PDF]
Sternberg, M. J. E., Barton, G. J., Zvelebil, M. J. J., Cookson, J., &
Coates, A. R. M., (1987),
"Prediction of Antigenic Determinants and Secondary Structures of the Major AIDS Virus Proteins", FEBS Lett., 281, 231-237. (BBK) [PDF]
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