Uses of Class
compbio.metadata.Preset

Packages that use Preset

compbio.data.msa	Web Service interfaces for JAva Bioinformatics Analysis Web Services.
compbio.data.msa.jaxws
compbio.metadata	A meta-data model for multiple sequence alignment web services Classes in this package have no dependencies to other sources in the project.
compbio.ws.server

Uses of Preset in compbio.data.msa

Methods in compbio.data.msa with parameters of type Preset

java.lang.String	MsaWS.presetAlign(java.util.List<FastaSequence> sequences, Preset<T> preset) Align a list of sequences with preset.
java.lang.String	SequenceAnnotation.presetAnalize(java.util.List<FastaSequence> sequences, Preset<T> preset) Analyse the sequences according to the preset settings.

Uses of Preset in compbio.data.msa.jaxws

Methods in compbio.data.msa.jaxws that return Preset

Preset	PresetAnalize.getPreset()
Preset	PresetAlign.getPreset()

Methods in compbio.data.msa.jaxws with parameters of type Preset

void	PresetAnalize.setPreset(Preset preset)
void	PresetAlign.setPreset(Preset preset)

Uses of Preset in compbio.metadata

Methods in compbio.metadata that return Preset

Preset<T>

PresetManager.getPresetByName(java.lang.String presetName)

Methods in compbio.metadata that return types with arguments of type Preset

java.util.List<Preset<T>>

PresetManager.getPresets()

Method parameters in compbio.metadata with type arguments of type Preset

void	PresetManager.setPresets(java.util.List<Preset<T>> presets)

Uses of Preset in compbio.ws.server

Methods in compbio.ws.server with parameters of type Preset

java.lang.String	ClustalOWS.presetAlign(java.util.List<FastaSequence> sequences, Preset<ClustalO> preset)
java.lang.String	ClustalWS.presetAlign(java.util.List<FastaSequence> sequences, Preset<ClustalW> preset)
java.lang.String	MafftWS.presetAlign(java.util.List<FastaSequence> sequences, Preset<Mafft> preset)
java.lang.String	MuscleWS.presetAlign(java.util.List<FastaSequence> sequences, Preset<Muscle> preset)
java.lang.String	ProbconsWS.presetAlign(java.util.List<FastaSequence> sequences, Preset<Probcons> preset)
java.lang.String	TcoffeeWS.presetAlign(java.util.List<FastaSequence> sequences, Preset<Tcoffee> preset)
java.lang.String	DisemblWS.presetAnalize(java.util.List<FastaSequence> sequences, Preset<Disembl> preset)
java.lang.String	GlobPlotWS.presetAnalize(java.util.List<FastaSequence> sequences, Preset<GlobPlot> preset)
java.lang.String	IUPredWS.presetAnalize(java.util.List<FastaSequence> sequences, Preset<IUPred> preset)
java.lang.String	SequenceAnnotationService.presetAnalize(java.util.List<FastaSequence> sequences, Preset<T> preset)