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Tcoffee
- Class in
compbio.runner.msa
Tcoffee()
- Constructor for class compbio.runner.msa.
Tcoffee
TCOFFEE_INFO
- Static variable in enum compbio.ws.client.
Services
TcoffeeWS
- Class in
compbio.ws.server
TcoffeeWS()
- Constructor for class compbio.ws.server.
TcoffeeWS
termSignal()
- Method in class compbio.engine.cluster.drmaa.
StatisticManager
TestAllServices
- Class in
compbio.data.msa.jaxws
TestAllServices()
- Constructor for class compbio.data.msa.jaxws.
TestAllServices
testAllServices()
- Method in interface compbio.data.msa.
RegistryWS
Test all JABAWS services on the server
testAllServices()
- Method in class compbio.ws.server.
RegistryWS
TODO improve reporting.
TestAllServicesResponse
- Class in
compbio.data.msa.jaxws
TestAllServicesResponse()
- Constructor for class compbio.data.msa.jaxws.
TestAllServicesResponse
TestService
- Class in
compbio.data.msa.jaxws
TestService()
- Constructor for class compbio.data.msa.jaxws.
TestService
testService(Services)
- Method in interface compbio.data.msa.
RegistryWS
Test a particular service
testService(String, Services, PrintWriter)
- Static method in class compbio.ws.client.
Jws2Client
Asks registry to test the service on the host hostname
testService(Services)
- Method in class compbio.ws.server.
RegistryWS
TestServiceResponse
- Class in
compbio.data.msa.jaxws
TestServiceResponse()
- Constructor for class compbio.data.msa.jaxws.
TestServiceResponse
to
- Variable in class compbio.data.sequence.
Range
toCommand(String)
- Method in class compbio.metadata.
Option
Convert the option to the command string.
toCommand(String)
- Method in class compbio.metadata.
Parameter
toString()
- Method in class compbio.data.sequence.
Alignment
toString()
- Method in class compbio.data.sequence.
FastaSequence
Same as oneLineFasta
toString()
- Method in class compbio.data.sequence.
Range
toString()
- Method in class compbio.data.sequence.
Score
toString()
- Method in class compbio.engine.client.
CommandBuilder
toString()
- Method in class compbio.engine.client.
ConfExecutable
toString()
- Method in class compbio.engine.client.
RunConfiguration
toString()
- Method in class compbio.engine.client.
SkeletalExecutable
toString()
- Method in class compbio.engine.cluster.drmaa.
StatisticManager
toString()
- Method in class compbio.engine.
FilePuller
toString()
- Method in class compbio.engine.
Job
toString()
- Method in class compbio.metadata.
ChunkHolder
toString()
- Method in class compbio.metadata.
Limit
toString()
- Method in class compbio.metadata.
LimitsManager
toString()
- Method in class compbio.metadata.
Option
toString()
- Method in class compbio.metadata.
Parameter
toString()
- Method in class compbio.metadata.
Preset
toString()
- Method in class compbio.metadata.
PresetManager
toString()
- Method in class compbio.metadata.
RunnerConfig
toString()
- Method in class compbio.metadata.
ValueConstrain
toString()
- Method in class compbio.stat.collector.
JobStat
toString()
- Method in class compbio.stat.collector.
StatProcessor
toString()
- Method in class compbio.stat.servlet.
ServiceTestResult
toString()
- Method in class compbio.stat.servlet.util.
StatCollection
toString(Set<Services>)
- Static method in enum compbio.ws.client.
Services
Totals
- Class in
compbio.stat.servlet.util
Totals()
- Constructor for class compbio.stat.servlet.util.
Totals
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