A C D E F G H I J K L M N O P R S T U V W

J

JABAService - Interface in compbio.data.msa

This is a marker interface, contains no methods

JManagement - Interface in compbio.data.msa

Job - Class in compbio.engine

Job(String, String, ConfiguredExecutable<?>) - Constructor for class compbio.engine.Job

JobExecutionException - Exception in compbio.metadata

JobExecutionException is thrown wherever the results of the calculation cannot be obtained.

JobExecutionException(String) - Constructor for exception compbio.metadata.JobExecutionException

JobExecutionException(Throwable) - Constructor for exception compbio.metadata.JobExecutionException

JobExecutionException(String, Throwable) - Constructor for exception compbio.metadata.JobExecutionException

JOBID - Static variable in class compbio.engine.cluster.drmaa.ClusterSession

Joblist - Class in compbio.stat.servlet

Joblist() - Constructor for class compbio.stat.servlet.Joblist

JobRunner - Class in compbio.engine.cluster.drmaa

Single cluster job runner class

JobRunner(ConfiguredExecutable<?>) - Constructor for class compbio.engine.cluster.drmaa.JobRunner

JobStat - Class in compbio.stat.collector

JobStatus - Enum in compbio.metadata

The status of the job.

JobSubmissionException - Exception in compbio.metadata

Exception for generic problems with JobSubmission it is often thrown as a wrapper for the lower level exceptions like IOException or DrmaaException.

JobSubmissionException(String) - Constructor for exception compbio.metadata.JobSubmissionException

JobSubmissionException(Throwable) - Constructor for exception compbio.metadata.JobSubmissionException

JobSubmissionException(String, Throwable) - Constructor for exception compbio.metadata.JobSubmissionException

JobSubmissionExceptionBean - Class in compbio.data.msa.jaxws

This class was generated by the JAX-WS RI.

JobSubmissionExceptionBean() - Constructor for class compbio.data.msa.jaxws.JobSubmissionExceptionBean

Jronn - Class in compbio.runner.disorder

Command line java -Xmx512 -jar jronn_v3.jar -i=test_seq.txt -n=1 -o=out.txt -s=stat.out

Jronn() - Constructor for class compbio.runner.disorder.Jronn

JRONN_INFO - Static variable in enum compbio.ws.client.Services

JronnWS - Class in compbio.ws.server

JronnWS() - Constructor for class compbio.ws.server.JronnWS

Jws2Client - Class in compbio.ws.client

A command line client for JAva Bioinformatics Analysis Web Services