A C D E F G H I J K L M N O P R S T U V W

N

name - Variable in class compbio.data.msa.Category

newCommandBuilder(List<? extends Option<T>>, String) - Static method in class compbio.engine.client.CommandBuilder

This produces the same result as getCommands method.

newConfExecutable(RunConfiguration) - Static method in class compbio.engine.client.ConfExecutable

newFilePuller(String, int) - Static method in class compbio.engine.FilePuller

newInstance(Map<String, Set<Score>>) - Static method in class compbio.data.sequence.ScoreManager

newInstanceSingleScore(Map<String, Score>) - Static method in class compbio.data.sequence.ScoreManager

newInstanceSingleSequence(Set<Score>) - Static method in class compbio.data.sequence.ScoreManager

newLimitExceeded(Limit<?>, List<FastaSequence>) - Static method in exception compbio.metadata.LimitExceededException

newProgressPuller(String) - Static method in class compbio.engine.FilePuller

Progress Puller is designed to read 3 characters from the beginning of the file, nothing more.

newStatCollecton(Date, Date) - Static method in class compbio.stat.servlet.util.StatCollection

next() - Method in class compbio.data.sequence.FastaReader

Reads the next FastaSequence from the input

NON_AA - Static variable in class compbio.data.sequence.SequenceUtil

inversion of AA pattern

NON_NUCLEOTIDE - Static variable in class compbio.data.sequence.SequenceUtil

Non nucleotide

NONWORD - Static variable in class compbio.data.sequence.SequenceUtil

Non word

NUCLEOTIDE - Static variable in class compbio.data.sequence.SequenceUtil

Nucleotides a, t, g, c, u