JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 16:16 4.7KJPred server log file
[TXT]README2016-02-15 12:16 2.1KResults file descriptions
[TXT]d1b25a2.name2015-04-17 15:54 0 Job name flag file
[ ]jp_RyfPC5u.align2015-04-17 16:16 203KPSIBLAST alignment in FASTA format
[TXT]jp_RyfPC5u.als2015-04-17 16:16 3.7KAlscript command file for PS/PDF output
[ ]jp_RyfPC5u.blast.gz2015-04-17 16:15 1.0MCompressed PSIBLAST output file
[TXT]jp_RyfPC5u.coils.csv2015-04-17 16:16 1.3KCOILS output in CSV format
[ ]jp_RyfPC5u.coilseq.lupas_142015-04-17 16:16 8.8KCOILS output, window length 14
[ ]jp_RyfPC5u.coilseq.lupas_212015-04-17 16:16 8.8KCOILS output, window length 21
[ ]jp_RyfPC5u.coilseq.lupas_282015-04-17 16:16 8.8KCOILS output, window length 28
[ ]jp_RyfPC5u.concise2015-04-17 16:16 403KPrediction: coiled-coil, solvent, alignment
[ ]jp_RyfPC5u.concise.blc2015-04-17 16:16 204KBLC format prediction and alignment data
[ ]jp_RyfPC5u.concise.fasta2015-04-17 16:16 206KPrediction: coiled-coil, solvent, alignment
[ ]jp_RyfPC5u.concise.pdf2015-04-17 16:16 1.4MPDF prediction and alignment data
[ ]jp_RyfPC5u.concise.ps2015-04-17 16:16 25MPrediction: coiled-coil, solvent, alignment
[ ]jp_RyfPC5u.fasta2015-04-17 16:12 225 Input query sequence in FASTA format
[ ]jp_RyfPC5u.full_MSA.fasta2015-04-17 16:15 1.4MFull MSA before JPred filters in FASTA
[TXT]jp_RyfPC5u.full_MSA.fasta.noGaps.html2015-04-17 16:16 455KFull MSA before JPred filters in FASTA
[TXT]jp_RyfPC5u.full_MSA.fasta.withGaps.html2015-04-17 16:16 6.0MFull MSA before JPred filters in FASTA
[ ]jp_RyfPC5u.hmm2015-04-17 16:16 39KHHMer2 profile of the alignment
[TXT]jp_RyfPC5u.html2015-04-17 16:16 398KHTML prediction and alignment data
[ ]jp_RyfPC5u.input2015-04-17 15:54 217 Raw input data for analysis
[ ]jp_RyfPC5u.jalview2015-04-17 16:16 5.0KJalview annotation file for alignment
[ ]jp_RyfPC5u.jnet2015-04-17 16:16 7.7KJnet secondary structure output
[TXT]jp_RyfPC5u.profile2015-04-17 16:15 34KPSIBLAST profile from alignment
[ ]jp_RyfPC5u.pssm2015-04-17 16:16 45KPSIBLAST PSSM for Jnet
[TXT]jp_RyfPC5u.results.html2016-02-15 12:16 94KJPred results page
[TXT]jp_RyfPC5u.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_RyfPC5u.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_RyfPC5u.seq2015-04-17 15:54 225 Sequence data file
[TXT]jp_RyfPC5u.simple.html2015-04-17 16:16 1.7KBrief HTML: sequence and prediction only
[TXT]jp_RyfPC5u.svg.html2015-04-17 16:16 86KJalview SVG summary of results
[ ]jp_RyfPC5u.tar.gz2015-04-17 16:16 3.3MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.