JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 15:00 4.7KJPred server log file
[TXT]README2016-02-15 12:16 2.1KResults file descriptions
[TXT]d1bcoa1.name2015-04-17 14:55 0 Job name flag file
[ ]jp_8V_s0pq.align2015-04-17 14:59 37KPSIBLAST alignment in FASTA format
[TXT]jp_8V_s0pq.als2015-04-17 14:59 2.5KAlscript command file for PS/PDF output
[ ]jp_8V_s0pq.blast.gz2015-04-17 14:59 88KCompressed PSIBLAST output file
[TXT]jp_8V_s0pq.coils.csv2015-04-17 14:59 510 COILS output in CSV format
[ ]jp_8V_s0pq.coilseq.lupas_142015-04-17 14:59 3.4KCOILS output, window length 14
[ ]jp_8V_s0pq.coilseq.lupas_212015-04-17 14:59 3.4KCOILS output, window length 21
[ ]jp_8V_s0pq.coilseq.lupas_282015-04-17 14:59 3.4KCOILS output, window length 28
[ ]jp_8V_s0pq.concise2015-04-17 14:59 72KPrediction: coiled-coil, solvent, alignment
[ ]jp_8V_s0pq.concise.blc2015-04-17 14:59 37KBLC format prediction and alignment data
[ ]jp_8V_s0pq.concise.fasta2015-04-17 14:59 38KPrediction: coiled-coil, solvent, alignment
[ ]jp_8V_s0pq.concise.pdf2015-04-17 14:59 230KPDF prediction and alignment data
[ ]jp_8V_s0pq.concise.ps2015-04-17 14:59 4.0MPrediction: coiled-coil, solvent, alignment
[ ]jp_8V_s0pq.fasta2015-04-17 14:55 94 Input query sequence in FASTA format
[ ]jp_8V_s0pq.full_MSA.fasta2015-04-17 14:59 159KFull MSA before JPred filters in FASTA
[TXT]jp_8V_s0pq.full_MSA.fasta.noGaps.html2015-04-17 14:59 121KFull MSA before JPred filters in FASTA
[TXT]jp_8V_s0pq.full_MSA.fasta.withGaps.html2015-04-17 14:59 881KFull MSA before JPred filters in FASTA
[ ]jp_8V_s0pq.hmm2015-04-17 14:59 15KHHMer2 profile of the alignment
[TXT]jp_8V_s0pq.html2015-04-17 14:59 117KHTML prediction and alignment data
[ ]jp_8V_s0pq.input2015-04-17 14:55 87 Raw input data for analysis
[ ]jp_8V_s0pq.jalview2015-04-17 14:59 2.4KJalview annotation file for alignment
[ ]jp_8V_s0pq.jnet2015-04-17 14:59 3.0KJnet secondary structure output
[TXT]jp_8V_s0pq.profile2015-04-17 14:57 13KPSIBLAST profile from alignment
[ ]jp_8V_s0pq.pssm2015-04-17 14:59 17KPSIBLAST PSSM for Jnet
[TXT]jp_8V_s0pq.results.html2016-02-15 12:16 44KJPred results page
[TXT]jp_8V_s0pq.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_8V_s0pq.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_8V_s0pq.seq2015-04-17 14:55 94 Sequence data file
[TXT]jp_8V_s0pq.simple.html2015-04-17 14:59 1.2KBrief HTML: sequence and prediction only
[TXT]jp_8V_s0pq.svg.html2015-04-17 15:00 36KJalview SVG summary of results
[ ]jp_8V_s0pq.tar.gz2015-04-17 15:00 487KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.