JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 17:12 4.7KJPred server log file
[TXT]README2016-02-15 12:16 2.1KResults file descriptions
[TXT]d1bxya_.name2015-04-17 16:32 0 Job name flag file
[ ]jp_bc5abwn.align2015-04-17 17:12 53KPSIBLAST alignment in FASTA format
[TXT]jp_bc5abwn.als2015-04-17 17:12 1.9KAlscript command file for PS/PDF output
[ ]jp_bc5abwn.blast.gz2015-04-17 17:11 309KCompressed PSIBLAST output file
[TXT]jp_bc5abwn.coils.csv2015-04-17 17:12 390 COILS output in CSV format
[ ]jp_bc5abwn.coilseq.lupas_142015-04-17 17:12 2.5KCOILS output, window length 14
[ ]jp_bc5abwn.coilseq.lupas_212015-04-17 17:12 2.5KCOILS output, window length 21
[ ]jp_bc5abwn.coilseq.lupas_282015-04-17 17:12 2.5KCOILS output, window length 28
[ ]jp_bc5abwn.concise2015-04-17 17:12 101KPrediction: coiled-coil, solvent, alignment
[ ]jp_bc5abwn.concise.blc2015-04-17 17:12 53KBLC format prediction and alignment data
[ ]jp_bc5abwn.concise.fasta2015-04-17 17:12 54KPrediction: coiled-coil, solvent, alignment
[ ]jp_bc5abwn.concise.pdf2015-04-17 17:12 339KPDF prediction and alignment data
[ ]jp_bc5abwn.concise.ps2015-04-17 17:12 5.7MPrediction: coiled-coil, solvent, alignment
[ ]jp_bc5abwn.fasta2015-04-17 17:09 73 Input query sequence in FASTA format
[ ]jp_bc5abwn.full_MSA.fasta2015-04-17 17:11 297KFull MSA before JPred filters in FASTA
[TXT]jp_bc5abwn.full_MSA.fasta.noGaps.html2015-04-17 17:12 458KFull MSA before JPred filters in FASTA
[TXT]jp_bc5abwn.full_MSA.fasta.withGaps.html2015-04-17 17:12 1.9MFull MSA before JPred filters in FASTA
[ ]jp_bc5abwn.hmm2015-04-17 17:12 11KHHMer2 profile of the alignment
[TXT]jp_bc5abwn.html2015-04-17 17:12 191KHTML prediction and alignment data
[ ]jp_bc5abwn.input2015-04-17 16:32 67 Raw input data for analysis
[ ]jp_bc5abwn.jalview2015-04-17 17:12 2.0KJalview annotation file for alignment
[ ]jp_bc5abwn.jnet2015-04-17 17:12 2.3KJnet secondary structure output
[TXT]jp_bc5abwn.profile2015-04-17 17:11 10KPSIBLAST profile from alignment
[ ]jp_bc5abwn.pssm2015-04-17 17:12 13KPSIBLAST PSSM for Jnet
[TXT]jp_bc5abwn.results.html2016-02-15 12:16 35KJPred results page
[TXT]jp_bc5abwn.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_bc5abwn.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_bc5abwn.seq2015-04-17 16:32 73 Sequence data file
[TXT]jp_bc5abwn.simple.html2015-04-17 17:12 1.1KBrief HTML: sequence and prediction only
[TXT]jp_bc5abwn.svg.html2015-04-17 17:12 27KJalview SVG summary of results
[ ]jp_bc5abwn.tar.gz2015-04-17 17:12 966KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.