JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 21:16 4.7KJPred server log file
[TXT]README2016-02-15 12:16 2.1KResults file descriptions
[TXT]d1cc8a_.name2015-04-17 18:59 0 Job name flag file
[ ]jp_Nju8Xn0.align2015-04-17 21:15 85KPSIBLAST alignment in FASTA format
[TXT]jp_Nju8Xn0.als2015-04-17 21:15 2.0KAlscript command file for PS/PDF output
[ ]jp_Nju8Xn0.blast.gz2015-04-17 21:14 1.5MCompressed PSIBLAST output file
[TXT]jp_Nju8Xn0.coils.csv2015-04-17 21:15 462 COILS output in CSV format
[ ]jp_Nju8Xn0.coilseq.lupas_142015-04-17 21:15 3.0KCOILS output, window length 14
[ ]jp_Nju8Xn0.coilseq.lupas_212015-04-17 21:15 3.0KCOILS output, window length 21
[ ]jp_Nju8Xn0.coilseq.lupas_282015-04-17 21:15 3.0KCOILS output, window length 28
[ ]jp_Nju8Xn0.concise2015-04-17 21:15 163KPrediction: coiled-coil, solvent, alignment
[ ]jp_Nju8Xn0.concise.blc2015-04-17 21:15 86KBLC format prediction and alignment data
[ ]jp_Nju8Xn0.concise.fasta2015-04-17 21:15 87KPrediction: coiled-coil, solvent, alignment
[ ]jp_Nju8Xn0.concise.pdf2015-04-17 21:16 501KPDF prediction and alignment data
[ ]jp_Nju8Xn0.concise.ps2015-04-17 21:16 9.0MPrediction: coiled-coil, solvent, alignment
[ ]jp_Nju8Xn0.fasta2015-04-17 21:10 86 Input query sequence in FASTA format
[ ]jp_Nju8Xn0.full_MSA.fasta2015-04-17 21:15 5.1MFull MSA before JPred filters in FASTA
[TXT]jp_Nju8Xn0.full_MSA.fasta.noGaps.html2015-04-17 21:16 1.9MFull MSA before JPred filters in FASTA
[TXT]jp_Nju8Xn0.full_MSA.fasta.withGaps.html2015-04-17 21:16 20MFull MSA before JPred filters in FASTA
[ ]jp_Nju8Xn0.hmm2015-04-17 21:15 14KHHMer2 profile of the alignment
[TXT]jp_Nju8Xn0.html2015-04-17 21:15 278KHTML prediction and alignment data
[ ]jp_Nju8Xn0.input2015-04-17 18:59 79 Raw input data for analysis
[ ]jp_Nju8Xn0.jalview2015-04-17 21:15 2.3KJalview annotation file for alignment
[ ]jp_Nju8Xn0.jnet2015-04-17 21:15 2.7KJnet secondary structure output
[TXT]jp_Nju8Xn0.profile2015-04-17 21:12 12KPSIBLAST profile from alignment
[ ]jp_Nju8Xn0.pssm2015-04-17 21:15 15KPSIBLAST PSSM for Jnet
[TXT]jp_Nju8Xn0.results.html2016-02-15 12:16 40KJPred results page
[TXT]jp_Nju8Xn0.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_Nju8Xn0.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_Nju8Xn0.seq2015-04-17 18:59 86 Sequence data file
[TXT]jp_Nju8Xn0.simple.html2015-04-17 21:15 1.1KBrief HTML: sequence and prediction only
[TXT]jp_Nju8Xn0.svg.html2015-04-17 21:16 32KJalview SVG summary of results
[ ]jp_Nju8Xn0.tar.gz2015-04-17 21:16 4.1MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.