JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 20:19 4.7KJPred server log file
[TXT]README2016-02-15 12:16 2.1KResults file descriptions
[TXT]d1cy5a_.name2015-04-17 18:23 0 Job name flag file
[ ]jp_P2EOKj0.align2015-04-17 20:19 73KPSIBLAST alignment in FASTA format
[TXT]jp_P2EOKj0.als2015-04-17 20:19 2.1KAlscript command file for PS/PDF output
[ ]jp_P2EOKj0.blast.gz2015-04-17 20:18 407KCompressed PSIBLAST output file
[TXT]jp_P2EOKj0.coils.csv2015-04-17 20:19 582 COILS output in CSV format
[ ]jp_P2EOKj0.coilseq.lupas_142015-04-17 20:19 3.9KCOILS output, window length 14
[ ]jp_P2EOKj0.coilseq.lupas_212015-04-17 20:19 3.9KCOILS output, window length 21
[ ]jp_P2EOKj0.coilseq.lupas_282015-04-17 20:19 3.9KCOILS output, window length 28
[ ]jp_P2EOKj0.concise2015-04-17 20:19 140KPrediction: coiled-coil, solvent, alignment
[ ]jp_P2EOKj0.concise.blc2015-04-17 20:19 73KBLC format prediction and alignment data
[ ]jp_P2EOKj0.concise.fasta2015-04-17 20:19 74KPrediction: coiled-coil, solvent, alignment
[ ]jp_P2EOKj0.concise.pdf2015-04-17 20:19 467KPDF prediction and alignment data
[ ]jp_P2EOKj0.concise.ps2015-04-17 20:19 8.0MPrediction: coiled-coil, solvent, alignment
[ ]jp_P2EOKj0.fasta2015-04-17 20:14 106 Input query sequence in FASTA format
[ ]jp_P2EOKj0.full_MSA.fasta2015-04-17 20:18 1.1MFull MSA before JPred filters in FASTA
[TXT]jp_P2EOKj0.full_MSA.fasta.noGaps.html2015-04-17 20:19 540KFull MSA before JPred filters in FASTA
[TXT]jp_P2EOKj0.full_MSA.fasta.withGaps.html2015-04-17 20:19 5.9MFull MSA before JPred filters in FASTA
[ ]jp_P2EOKj0.hmm2015-04-17 20:19 17KHHMer2 profile of the alignment
[TXT]jp_P2EOKj0.html2015-04-17 20:19 209KHTML prediction and alignment data
[ ]jp_P2EOKj0.input2015-04-17 18:23 99 Raw input data for analysis
[ ]jp_P2EOKj0.jalview2015-04-17 20:19 2.7KJalview annotation file for alignment
[ ]jp_P2EOKj0.jnet2015-04-17 20:19 3.4KJnet secondary structure output
[TXT]jp_P2EOKj0.profile2015-04-17 20:18 15KPSIBLAST profile from alignment
[ ]jp_P2EOKj0.pssm2015-04-17 20:19 20KPSIBLAST PSSM for Jnet
[TXT]jp_P2EOKj0.results.html2016-02-15 12:16 48KJPred results page
[TXT]jp_P2EOKj0.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_P2EOKj0.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_P2EOKj0.seq2015-04-17 18:23 106 Sequence data file
[TXT]jp_P2EOKj0.simple.html2015-04-17 20:19 1.2KBrief HTML: sequence and prediction only
[TXT]jp_P2EOKj0.svg.html2015-04-17 20:19 40KJalview SVG summary of results
[ ]jp_P2EOKj0.tar.gz2015-04-17 20:19 1.5MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.