JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 16:41 4.7KJPred server log file
[TXT]README2016-02-15 12:16 2.1KResults file descriptions
[TXT]d1ds1a_.name2015-04-17 15:56 0 Job name flag file
[ ]jp_lwmm4kn.align2015-04-17 16:40 342KPSIBLAST alignment in FASTA format
[TXT]jp_lwmm4kn.als2015-04-17 16:40 4.4KAlscript command file for PS/PDF output
[ ]jp_lwmm4kn.blast.gz2015-04-17 16:37 5.9MCompressed PSIBLAST output file
[TXT]jp_lwmm4kn.coils.csv2015-04-17 16:40 1.9KCOILS output in CSV format
[ ]jp_lwmm4kn.coilseq.lupas_142015-04-17 16:40 14KCOILS output, window length 14
[ ]jp_lwmm4kn.coilseq.lupas_212015-04-17 16:40 14KCOILS output, window length 21
[ ]jp_lwmm4kn.coilseq.lupas_282015-04-17 16:40 14KCOILS output, window length 28
[ ]jp_lwmm4kn.concise2015-04-17 16:40 679KPrediction: coiled-coil, solvent, alignment
[ ]jp_lwmm4kn.concise.blc2015-04-17 16:40 342KBLC format prediction and alignment data
[ ]jp_lwmm4kn.concise.fasta2015-04-17 16:40 346KPrediction: coiled-coil, solvent, alignment
[ ]jp_lwmm4kn.concise.pdf2015-04-17 16:40 2.1MPDF prediction and alignment data
[ ]jp_lwmm4kn.concise.ps2015-04-17 16:40 40MPrediction: coiled-coil, solvent, alignment
[ ]jp_lwmm4kn.fasta2015-04-17 16:14 340 Input query sequence in FASTA format
[ ]jp_lwmm4kn.full_MSA.fasta2015-04-17 16:38 23MFull MSA before JPred filters in FASTA
[TXT]jp_lwmm4kn.full_MSA.fasta.noGaps.html2015-04-17 16:41 2.1MFull MSA before JPred filters in FASTA
[TXT]jp_lwmm4kn.full_MSA.fasta.withGaps.html2015-04-17 16:41 58MFull MSA before JPred filters in FASTA
[ ]jp_lwmm4kn.hmm2015-04-17 16:40 61KHHMer2 profile of the alignment
[TXT]jp_lwmm4kn.html2015-04-17 16:40 562KHTML prediction and alignment data
[ ]jp_lwmm4kn.input2015-04-17 15:56 330 Raw input data for analysis
[ ]jp_lwmm4kn.jalview2015-04-17 16:40 7.2KJalview annotation file for alignment
[ ]jp_lwmm4kn.jnet2015-04-17 16:40 12KJnet secondary structure output
[TXT]jp_lwmm4kn.profile2015-04-17 16:32 52KPSIBLAST profile from alignment
[ ]jp_lwmm4kn.pssm2015-04-17 16:40 69KPSIBLAST PSSM for Jnet
[TXT]jp_lwmm4kn.results.html2016-02-15 12:16 136KJPred results page
[TXT]jp_lwmm4kn.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_lwmm4kn.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_lwmm4kn.seq2015-04-17 15:56 340 Sequence data file
[TXT]jp_lwmm4kn.simple.html2015-04-17 16:40 2.0KBrief HTML: sequence and prediction only
[TXT]jp_lwmm4kn.svg.html2015-04-17 16:41 128KJalview SVG summary of results
[ ]jp_lwmm4kn.tar.gz2015-04-17 16:41 14MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.