JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 19:53 5.0KJPred server log file
[TXT]README2016-02-15 12:16 2.1KResults file descriptions
[TXT]d1dtdb_.name2015-04-17 17:09 0 Job name flag file
[ ]jp_jwHcoST.align2015-04-17 19:53 148 PSIBLAST alignment in FASTA format
[TXT]jp_jwHcoST.als2015-04-17 19:53 1.7KAlscript command file for PS/PDF output
[ ]jp_jwHcoST.blast.gz2015-04-17 19:53 1.6KCompressed PSIBLAST output file
[TXT]jp_jwHcoST.coils.csv2015-04-17 19:53 396 COILS output in CSV format
[ ]jp_jwHcoST.coilseq.lupas_142015-04-17 19:53 2.6KCOILS output, window length 14
[ ]jp_jwHcoST.coilseq.lupas_212015-04-17 19:53 2.6KCOILS output, window length 21
[ ]jp_jwHcoST.coilseq.lupas_282015-04-17 19:53 2.6KCOILS output, window length 28
[ ]jp_jwHcoST.concise2015-04-17 19:53 3.0KPrediction: coiled-coil, solvent, alignment
[ ]jp_jwHcoST.concise.blc2015-04-17 19:53 1.1KBLC format prediction and alignment data
[ ]jp_jwHcoST.concise.fasta2015-04-17 19:53 868 Prediction: coiled-coil, solvent, alignment
[ ]jp_jwHcoST.concise.pdf2015-04-17 19:53 7.3KPDF prediction and alignment data
[ ]jp_jwHcoST.concise.ps2015-04-17 19:53 107KPrediction: coiled-coil, solvent, alignment
[ ]jp_jwHcoST.fasta2015-04-17 18:12 74 Input query sequence in FASTA format
[ ]jp_jwHcoST.full_MSA.fasta2015-04-17 19:53 148 Full MSA before JPred filters in FASTA
[TXT]jp_jwHcoST.full_MSA.fasta.noGaps.html2015-04-17 19:53 475 Full MSA before JPred filters in FASTA
[TXT]jp_jwHcoST.full_MSA.fasta.withGaps.html2015-04-17 19:53 475 Full MSA before JPred filters in FASTA
[ ]jp_jwHcoST.hmm2015-04-17 19:53 11KHHMer2 profile of the alignment
[TXT]jp_jwHcoST.html2015-04-17 19:53 6.1KHTML prediction and alignment data
[ ]jp_jwHcoST.input2015-04-17 17:09 68 Raw input data for analysis
[ ]jp_jwHcoST.jalview2015-04-17 19:53 2.0KJalview annotation file for alignment
[ ]jp_jwHcoST.jnet2015-04-17 19:53 2.3KJnet secondary structure output
[TXT]jp_jwHcoST.profile2015-04-17 19:30 10KPSIBLAST profile from alignment
[ ]jp_jwHcoST.pssm2015-04-17 19:53 13KPSIBLAST PSSM for Jnet
[TXT]jp_jwHcoST.results.html2016-02-15 12:16 34KJPred results page
[TXT]jp_jwHcoST.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_jwHcoST.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_jwHcoST.seq2015-04-17 17:09 74 Sequence data file
[TXT]jp_jwHcoST.simple.html2015-04-17 19:53 1.1KBrief HTML: sequence and prediction only
[TXT]jp_jwHcoST.svg.html2015-04-17 19:53 26KJalview SVG summary of results
[ ]jp_jwHcoST.tar.gz2015-04-17 19:53 24KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.